Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANAPC10 (anaphase promoting complex subunit 10)

Identity

Alias_symbol (synonym)APC10
DOC1
DKFZP564L0562
Other alias
HGNC (Hugo) ANAPC10
LocusID (NCBI) 10393
Atlas_Id 60287
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 144994575 and ends at 145098219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANAPC10 (4q31.21) / OTUD4 (4q31.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANAPC10   24077
Cards
Entrez_Gene (NCBI)ANAPC10  10393  anaphase promoting complex subunit 10
AliasesAPC10; DOC1
GeneCards (Weizmann)ANAPC10
Ensembl hg19 (Hinxton)ENSG00000164162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164162 [Gene_View]  chr4:144994575-145098219 [Contig_View]  ANAPC10 [Vega]
ICGC DataPortalENSG00000164162
TCGA cBioPortalANAPC10
AceView (NCBI)ANAPC10
Genatlas (Paris)ANAPC10
WikiGenes10393
SOURCE (Princeton)ANAPC10
Genetics Home Reference (NIH)ANAPC10
Genomic and cartography
GoldenPath hg38 (UCSC)ANAPC10  -     chr4:144994575-145098219 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANAPC10  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblANAPC10 - 4q31.21 [CytoView hg19]  ANAPC10 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIANAPC10 [Mapview hg19]  ANAPC10 [Mapview hg38]
OMIM613745   
Gene and transcription
Genbank (Entrez)AB012109 AF132794 AL080090 AV757106 AW025455
RefSeq transcript (Entrez)NM_001256706 NM_001256707 NM_001256708 NM_001256709 NM_001256710 NM_001256711 NM_001256712 NM_001318367 NM_014885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANAPC10
Cluster EST : UnigeneHs.480876 [ NCBI ]
CGAP (NCI)Hs.480876
Alternative Splicing GalleryENSG00000164162
Gene ExpressionANAPC10 [ NCBI-GEO ]   ANAPC10 [ EBI - ARRAY_EXPRESS ]   ANAPC10 [ SEEK ]   ANAPC10 [ MEM ]
Gene Expression Viewer (FireBrowse)ANAPC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10393
GTEX Portal (Tissue expression)ANAPC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UM13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UM13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UM13
Splice isoforms : SwissVarQ9UM13
PhosPhoSitePlusQ9UM13
Domaine pattern : Prosite (Expaxy)DOC (PS51284)   
Domains : Interpro (EBI)APC10    APC_su10/DOC_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)ANAPC10 (PF03256)   
Domain families : Pfam (NCBI)pfam03256   
Domain families : Smart (EMBL)APC10 (SM01337)  
Conserved Domain (NCBI)ANAPC10
DMDM Disease mutations10393
Blocks (Seattle)ANAPC10
PDB (SRS)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (PDBSum)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (IMB)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (RSDB)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
Structural Biology KnowledgeBase1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
SCOP (Structural Classification of Proteins)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
CATH (Classification of proteins structures)1JHJ    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
SuperfamilyQ9UM13
Human Protein AtlasENSG00000164162
Peptide AtlasQ9UM13
HPRD16488
IPIIPI00007088   IPI00964623   IPI00965279   IPI00967005   IPI00965523   
Protein Interaction databases
DIP (DOE-UCLA)Q9UM13
IntAct (EBI)Q9UM13
FunCoupENSG00000164162
BioGRIDANAPC10
STRING (EMBL)ANAPC10
ZODIACANAPC10
Ontologies - Pathways
QuickGOQ9UM13
Ontology : AmiGOnucleoplasm  anaphase-promoting complex  cytosol  regulation of mitotic metaphase/anaphase transition  anaphase-promoting complex-dependent catabolic process  anaphase-promoting complex-dependent catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Ontology : EGO-EBInucleoplasm  anaphase-promoting complex  cytosol  regulation of mitotic metaphase/anaphase transition  anaphase-promoting complex-dependent catabolic process  anaphase-promoting complex-dependent catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Pathways : KEGGCell cycle    Oocyte meiosis    Ubiquitin mediated proteolysis    Progesterone-mediated oocyte maturation    HTLV-I infection   
NDEx NetworkANAPC10
Atlas of Cancer Signalling NetworkANAPC10
Wikipedia pathwaysANAPC10
Orthology - Evolution
OrthoDB10393
GeneTree (enSembl)ENSG00000164162
Phylogenetic Trees/Animal Genes : TreeFamANAPC10
HOVERGENQ9UM13
HOGENOMQ9UM13
Homologs : HomoloGeneANAPC10
Homology/Alignments : Family Browser (UCSC)ANAPC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANAPC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANAPC10
dbVarANAPC10
ClinVarANAPC10
1000_GenomesANAPC10 
Exome Variant ServerANAPC10
ExAC (Exome Aggregation Consortium)ANAPC10 (select the gene name)
Genetic variants : HAPMAP10393
Genomic Variants (DGV)ANAPC10 [DGVbeta]
DECIPHERANAPC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANAPC10 
Mutations
ICGC Data PortalANAPC10 
TCGA Data PortalANAPC10 
Broad Tumor PortalANAPC10
OASIS PortalANAPC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANAPC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANAPC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANAPC10
DgiDB (Drug Gene Interaction Database)ANAPC10
DoCM (Curated mutations)ANAPC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANAPC10 (select a term)
intoGenANAPC10
Cancer3DANAPC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613745   
Orphanet
MedgenANAPC10
Genetic Testing Registry ANAPC10
NextProtQ9UM13 [Medical]
TSGene10393
GENETestsANAPC10
Target ValidationANAPC10
Huge Navigator ANAPC10 [HugePedia]
snp3D : Map Gene to Disease10393
BioCentury BCIQANAPC10
ClinGenANAPC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10393
Chemical/Pharm GKB GenePA134938672
Clinical trialANAPC10
Miscellaneous
canSAR (ICR)ANAPC10 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANAPC10
EVEXANAPC10
GoPubMedANAPC10
iHOPANAPC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:01:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.