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ANAPC13 (anaphase promoting complex subunit 13)

Identity

Alias_symbol (synonym)SWM1
APC13
DKFZP566D193
Other alias
HGNC (Hugo) ANAPC13
LocusID (NCBI) 25847
Atlas_Id 47188
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134196546 and ends at 134204865 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANAPC13 (3q22.2) / ANAPC13 (3q22.2)MGLL (3q21.3) / ANAPC13 (3q22.2)SACM1L (3p21.31) / ANAPC13 (3q22.2)
SACM1L 3p21.31 / ANAPC13 3q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANAPC13   24540
Cards
Entrez_Gene (NCBI)ANAPC13  25847  anaphase promoting complex subunit 13
AliasesAPC13; SWM1
GeneCards (Weizmann)ANAPC13
Ensembl hg19 (Hinxton)ENSG00000129055 [Gene_View]  chr3:134196546-134204865 [Contig_View]  ANAPC13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129055 [Gene_View]  chr3:134196546-134204865 [Contig_View]  ANAPC13 [Vega]
ICGC DataPortalENSG00000129055
TCGA cBioPortalANAPC13
AceView (NCBI)ANAPC13
Genatlas (Paris)ANAPC13
WikiGenes25847
SOURCE (Princeton)ANAPC13
Genetics Home Reference (NIH)ANAPC13
Genomic and cartography
GoldenPath hg19 (UCSC)ANAPC13  -     chr3:134196546-134204865 -  3q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANAPC13  -     3q22.2   [Description]    (hg38-Dec_2013)
EnsemblANAPC13 - 3q22.2 [CytoView hg19]  ANAPC13 - 3q22.2 [CytoView hg38]
Mapping of homologs : NCBIANAPC13 [Mapview hg19]  ANAPC13 [Mapview hg38]
OMIM614484   
Gene and transcription
Genbank (Entrez)AF086169 AK001285 AK026550 AK290761 AL050051
RefSeq transcript (Entrez)NM_001242374 NM_001242375 NM_015391
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ANAPC13
Cluster EST : UnigeneHs.106909 [ NCBI ]
CGAP (NCI)Hs.106909
Alternative Splicing GalleryENSG00000129055
Gene ExpressionANAPC13 [ NCBI-GEO ]   ANAPC13 [ EBI - ARRAY_EXPRESS ]   ANAPC13 [ SEEK ]   ANAPC13 [ MEM ]
Gene Expression Viewer (FireBrowse)ANAPC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25847
GTEX Portal (Tissue expression)ANAPC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BS18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BS18
Splice isoforms : SwissVarQ9BS18
PhosPhoSitePlusQ9BS18
Domains : Interpro (EBI)Apc13p   
Domain families : Pfam (Sanger)Apc13p (PF05839)   
Domain families : Pfam (NCBI)pfam05839   
Conserved Domain (NCBI)ANAPC13
DMDM Disease mutations25847
Blocks (Seattle)ANAPC13
PDB (SRS)4UI9   
PDB (PDBSum)4UI9   
PDB (IMB)4UI9   
PDB (RSDB)4UI9   
Structural Biology KnowledgeBase4UI9   
SCOP (Structural Classification of Proteins)4UI9   
CATH (Classification of proteins structures)4UI9   
SuperfamilyQ9BS18
Human Protein AtlasENSG00000129055
Peptide AtlasQ9BS18
HPRD08531
IPIIPI00029244   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS18
IntAct (EBI)Q9BS18
FunCoupENSG00000129055
BioGRIDANAPC13
STRING (EMBL)ANAPC13
ZODIACANAPC13
Ontologies - Pathways
QuickGOQ9BS18
Ontology : AmiGOanaphase-promoting complex  mitotic nuclear division  cell division  protein K11-linked ubiquitination  
Ontology : EGO-EBIanaphase-promoting complex  mitotic nuclear division  cell division  protein K11-linked ubiquitination  
Pathways : KEGGCell cycle    Oocyte meiosis    Ubiquitin mediated proteolysis    Progesterone-mediated oocyte maturation   
NDEx NetworkANAPC13
Atlas of Cancer Signalling NetworkANAPC13
Wikipedia pathwaysANAPC13
Orthology - Evolution
OrthoDB25847
GeneTree (enSembl)ENSG00000129055
Phylogenetic Trees/Animal Genes : TreeFamANAPC13
HOVERGENQ9BS18
HOGENOMQ9BS18
Homologs : HomoloGeneANAPC13
Homology/Alignments : Family Browser (UCSC)ANAPC13
Gene fusions - Rearrangements
Fusion : MitelmanMGLL/ANAPC13 [3q21.3/3q22.2]  [t(3;3)(q21;q22)]  
Fusion : MitelmanSACM1L/ANAPC13 [3p21.31/3q22.2]  [t(3;3)(p21;q22)]  
Fusion: TCGASACM1L 3p21.31 ANAPC13 3q22.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANAPC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANAPC13
dbVarANAPC13
ClinVarANAPC13
1000_GenomesANAPC13 
Exome Variant ServerANAPC13
ExAC (Exome Aggregation Consortium)ANAPC13 (select the gene name)
Genetic variants : HAPMAP25847
Genomic Variants (DGV)ANAPC13 [DGVbeta]
DECIPHER (Syndromes)3:134196546-134204865  ENSG00000129055
CONAN: Copy Number AnalysisANAPC13 
Mutations
ICGC Data PortalANAPC13 
TCGA Data PortalANAPC13 
Broad Tumor PortalANAPC13
OASIS PortalANAPC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANAPC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANAPC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANAPC13
DgiDB (Drug Gene Interaction Database)ANAPC13
DoCM (Curated mutations)ANAPC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANAPC13 (select a term)
intoGenANAPC13
Cancer3DANAPC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614484   
Orphanet
MedgenANAPC13
Genetic Testing Registry ANAPC13
NextProtQ9BS18 [Medical]
TSGene25847
GENETestsANAPC13
Huge Navigator ANAPC13 [HugePedia]
snp3D : Map Gene to Disease25847
BioCentury BCIQANAPC13
ClinGenANAPC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25847
Chemical/Pharm GKB GenePA134949652
Clinical trialANAPC13
Miscellaneous
canSAR (ICR)ANAPC13 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANAPC13
EVEXANAPC13
GoPubMedANAPC13
iHOPANAPC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:44 CET 2017

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