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ANAPC16 (anaphase promoting complex subunit 16)

Identity

Alias_namesC10orf104
chromosome 10 open reading frame 104
Alias_symbol (synonym)bA570G20.3
FLJ33728
APC16
CENP-27
Other aliasMSAG
HGNC (Hugo) ANAPC16
LocusID (NCBI) 119504
Atlas_Id 60290
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 72216000 and ends at 72235860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACSF2 (17q21.33) / ANAPC16 (10q22.1)ANAPC16 (10q22.1) / ANAPC16 (10q22.1)ANAPC16 (10q22.1) / FLNB (3p14.3)
ANAPC16 (10q22.1) / MICU1 (10q22.1)ANAPC16 (10q22.1) / NR4A1 (12q13.13)TRBV20-1 () / ANAPC16 (10q22.1)
ZNF445 (3p21.31) / ANAPC16 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANAPC16   26976
Cards
Entrez_Gene (NCBI)ANAPC16  119504  anaphase promoting complex subunit 16
AliasesAPC16; C10orf104; CENP-27; MSAG; 
bA570G20.3
GeneCards (Weizmann)ANAPC16
Ensembl hg19 (Hinxton)ENSG00000166295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166295 [Gene_View]  chr10:72216000-72235860 [Contig_View]  ANAPC16 [Vega]
ICGC DataPortalENSG00000166295
TCGA cBioPortalANAPC16
AceView (NCBI)ANAPC16
Genatlas (Paris)ANAPC16
WikiGenes119504
SOURCE (Princeton)ANAPC16
Genetics Home Reference (NIH)ANAPC16
Genomic and cartography
GoldenPath hg38 (UCSC)ANAPC16  -     chr10:72216000-72235860 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANAPC16  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblANAPC16 - 10q22.1 [CytoView hg19]  ANAPC16 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBIANAPC16 [Mapview hg19]  ANAPC16 [Mapview hg38]
OMIM613427   
Gene and transcription
Genbank (Entrez)AI038150 AK023981 BC009530 BF975718 BM768948
RefSeq transcript (Entrez)NM_001242546 NM_001242547 NM_001242548 NM_173473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANAPC16
Cluster EST : UnigeneHs.426296 [ NCBI ]
CGAP (NCI)Hs.426296
Alternative Splicing GalleryENSG00000166295
Gene ExpressionANAPC16 [ NCBI-GEO ]   ANAPC16 [ EBI - ARRAY_EXPRESS ]   ANAPC16 [ SEEK ]   ANAPC16 [ MEM ]
Gene Expression Viewer (FireBrowse)ANAPC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119504
GTEX Portal (Tissue expression)ANAPC16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DE5
Splice isoforms : SwissVarQ96DE5
PhosPhoSitePlusQ96DE5
Domains : Interpro (EBI)APC16   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain structure : Prodom (Prabi Lyon)PD392219 (PD392219)   
Conserved Domain (NCBI)ANAPC16
DMDM Disease mutations119504
Blocks (Seattle)ANAPC16
PDB (SRS)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (PDBSum)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (IMB)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
PDB (RSDB)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
Structural Biology KnowledgeBase4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
SCOP (Structural Classification of Proteins)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
CATH (Classification of proteins structures)4RG6    4RG9    4UI9    5A31    5G04    5G05    5KHR    5L9T    5L9U    5LCW   
SuperfamilyQ96DE5
Human Protein AtlasENSG00000166295
Peptide AtlasQ96DE5
HPRD12554
IPIIPI00060893   
Protein Interaction databases
DIP (DOE-UCLA)Q96DE5
IntAct (EBI)Q96DE5
FunCoupENSG00000166295
BioGRIDANAPC16
STRING (EMBL)ANAPC16
ZODIACANAPC16
Ontologies - Pathways
QuickGOQ96DE5
Ontology : AmiGOkinetochore  condensed chromosome kinetochore  nucleoplasm  anaphase-promoting complex  cytosol  cytosol  protein ubiquitination  anaphase-promoting complex-dependent catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  
Ontology : EGO-EBIkinetochore  condensed chromosome kinetochore  nucleoplasm  anaphase-promoting complex  cytosol  cytosol  protein ubiquitination  anaphase-promoting complex-dependent catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  
NDEx NetworkANAPC16
Atlas of Cancer Signalling NetworkANAPC16
Wikipedia pathwaysANAPC16
Orthology - Evolution
OrthoDB119504
GeneTree (enSembl)ENSG00000166295
Phylogenetic Trees/Animal Genes : TreeFamANAPC16
HOVERGENQ96DE5
HOGENOMQ96DE5
Homologs : HomoloGeneANAPC16
Homology/Alignments : Family Browser (UCSC)ANAPC16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANAPC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANAPC16
dbVarANAPC16
ClinVarANAPC16
1000_GenomesANAPC16 
Exome Variant ServerANAPC16
ExAC (Exome Aggregation Consortium)ANAPC16 (select the gene name)
Genetic variants : HAPMAP119504
Genomic Variants (DGV)ANAPC16 [DGVbeta]
DECIPHERANAPC16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANAPC16 
Mutations
ICGC Data PortalANAPC16 
TCGA Data PortalANAPC16 
Broad Tumor PortalANAPC16
OASIS PortalANAPC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANAPC16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANAPC16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANAPC16
DgiDB (Drug Gene Interaction Database)ANAPC16
DoCM (Curated mutations)ANAPC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANAPC16 (select a term)
intoGenANAPC16
Cancer3DANAPC16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613427   
Orphanet
MedgenANAPC16
Genetic Testing Registry ANAPC16
NextProtQ96DE5 [Medical]
TSGene119504
GENETestsANAPC16
Target ValidationANAPC16
Huge Navigator ANAPC16 [HugePedia]
snp3D : Map Gene to Disease119504
BioCentury BCIQANAPC16
ClinGenANAPC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119504
Chemical/Pharm GKB GenePA165548225
Clinical trialANAPC16
Miscellaneous
canSAR (ICR)ANAPC16 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANAPC16
EVEXANAPC16
GoPubMedANAPC16
iHOPANAPC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:15 CEST 2017

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