Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ANGPTL1 (angiopoietin like 1)

Identity

Alias_namesANGPT3
angiopoietin-like 1
Alias_symbol (synonym)ANG3
AngY
ARP1
Other aliasUNQ162
dJ595C2.2
HGNC (Hugo) ANGPTL1
LocusID (NCBI) 9068
Atlas_Id 639
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178849535 and ends at 178871080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANGPTL1   489
Cards
Entrez_Gene (NCBI)ANGPTL1  9068  angiopoietin like 1
AliasesANG3; ANGPT3; ARP1; AngY; 
UNQ162; dJ595C2.2
GeneCards (Weizmann)ANGPTL1
Ensembl hg19 (Hinxton)ENSG00000116194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116194 [Gene_View]  ENSG00000116194 [Sequence]  chr1:178849535-178871080 [Contig_View]  ANGPTL1 [Vega]
ICGC DataPortalENSG00000116194
TCGA cBioPortalANGPTL1
AceView (NCBI)ANGPTL1
Genatlas (Paris)ANGPTL1
WikiGenes9068
SOURCE (Princeton)ANGPTL1
Genetics Home Reference (NIH)ANGPTL1
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL1  -     chr1:178849535-178871080 -  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL1  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblANGPTL1 - 1q25.2 [CytoView hg19]  ANGPTL1 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBIANGPTL1 [Mapview hg19]  ANGPTL1 [Mapview hg38]
OMIM603874   
Gene and transcription
Genbank (Entrez)AB056476 AF086266 AF107253 AK223467 AK300218
RefSeq transcript (Entrez)NM_004673
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL1
Cluster EST : UnigeneHs.591474 [ NCBI ]
CGAP (NCI)Hs.591474
Alternative Splicing GalleryENSG00000116194
Gene ExpressionANGPTL1 [ NCBI-GEO ]   ANGPTL1 [ EBI - ARRAY_EXPRESS ]   ANGPTL1 [ SEEK ]   ANGPTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9068
GTEX Portal (Tissue expression)ANGPTL1
Human Protein AtlasENSG00000116194-ANGPTL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95841   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95841  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95841
Splice isoforms : SwissVarO95841
PhosPhoSitePlusO95841
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen-like_C    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ANGPTL1
DMDM Disease mutations9068
Blocks (Seattle)ANGPTL1
SuperfamilyO95841
Human Protein Atlas [tissue]ENSG00000116194-ANGPTL1 [tissue]
Peptide AtlasO95841
HPRD04851
IPIIPI00005837   IPI00909248   IPI00643682   
Protein Interaction databases
DIP (DOE-UCLA)O95841
IntAct (EBI)O95841
FunCoupENSG00000116194
BioGRIDANGPTL1
STRING (EMBL)ANGPTL1
ZODIACANGPTL1
Ontologies - Pathways
QuickGOO95841
Ontology : AmiGOsignaling receptor binding  extracellular space  transmembrane receptor protein tyrosine kinase signaling pathway  extracellular exosome  
Ontology : EGO-EBIsignaling receptor binding  extracellular space  transmembrane receptor protein tyrosine kinase signaling pathway  extracellular exosome  
NDEx NetworkANGPTL1
Atlas of Cancer Signalling NetworkANGPTL1
Wikipedia pathwaysANGPTL1
Orthology - Evolution
OrthoDB9068
GeneTree (enSembl)ENSG00000116194
Phylogenetic Trees/Animal Genes : TreeFamANGPTL1
HOVERGENO95841
HOGENOMO95841
Homologs : HomoloGeneANGPTL1
Homology/Alignments : Family Browser (UCSC)ANGPTL1
Gene fusions - Rearrangements
Fusion : QuiverANGPTL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANGPTL1
dbVarANGPTL1
ClinVarANGPTL1
1000_GenomesANGPTL1 
Exome Variant ServerANGPTL1
ExAC (Exome Aggregation Consortium)ENSG00000116194
GNOMAD BrowserENSG00000116194
Varsome BrowserANGPTL1
Genetic variants : HAPMAP9068
Genomic Variants (DGV)ANGPTL1 [DGVbeta]
DECIPHERANGPTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL1 
Mutations
ICGC Data PortalANGPTL1 
TCGA Data PortalANGPTL1 
Broad Tumor PortalANGPTL1
OASIS PortalANGPTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANGPTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANGPTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANGPTL1
DgiDB (Drug Gene Interaction Database)ANGPTL1
DoCM (Curated mutations)ANGPTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL1 (select a term)
intoGenANGPTL1
Cancer3DANGPTL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603874   
Orphanet
DisGeNETANGPTL1
MedgenANGPTL1
Genetic Testing Registry ANGPTL1
NextProtO95841 [Medical]
TSGene9068
GENETestsANGPTL1
Target ValidationANGPTL1
Huge Navigator ANGPTL1 [HugePedia]
snp3D : Map Gene to Disease9068
BioCentury BCIQANGPTL1
ClinGenANGPTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9068
Chemical/Pharm GKB GenePA24794
Clinical trialANGPTL1
Miscellaneous
canSAR (ICR)ANGPTL1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL1
EVEXANGPTL1
GoPubMedANGPTL1
iHOPANGPTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:08:58 CEST 2018

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