Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ANGPTL2 (angiopoietin like 2)

Identity

Alias_namesangiopoietin-like 2
Alias_symbol (synonym)ARP2
HARP
Other alias
HGNC (Hugo) ANGPTL2
LocusID (NCBI) 23452
Atlas_Id 640
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127087349 and ends at 127122765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANGPTL2   490
Cards
Entrez_Gene (NCBI)ANGPTL2  23452  angiopoietin like 2
AliasesARP2; HARP
GeneCards (Weizmann)ANGPTL2
Ensembl hg19 (Hinxton)ENSG00000136859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136859 [Gene_View]  chr9:127087349-127122765 [Contig_View]  ANGPTL2 [Vega]
ICGC DataPortalENSG00000136859
TCGA cBioPortalANGPTL2
AceView (NCBI)ANGPTL2
Genatlas (Paris)ANGPTL2
WikiGenes23452
SOURCE (Princeton)ANGPTL2
Genetics Home Reference (NIH)ANGPTL2
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL2  -     chr9:127087349-127122765 -  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL2  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblANGPTL2 - 9q33.3 [CytoView hg19]  ANGPTL2 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIANGPTL2 [Mapview hg19]  ANGPTL2 [Mapview hg38]
OMIM605001   
Gene and transcription
Genbank (Entrez)AF007150 AF125175 AK074726 AK075026 AK307175
RefSeq transcript (Entrez)NM_012098
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL2
Cluster EST : UnigeneHs.653262 [ NCBI ]
CGAP (NCI)Hs.653262
Alternative Splicing GalleryENSG00000136859
Gene ExpressionANGPTL2 [ NCBI-GEO ]   ANGPTL2 [ EBI - ARRAY_EXPRESS ]   ANGPTL2 [ SEEK ]   ANGPTL2 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23452
GTEX Portal (Tissue expression)ANGPTL2
Human Protein AtlasENSG00000136859-ANGPTL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKU9
Splice isoforms : SwissVarQ9UKU9
PhosPhoSitePlusQ9UKU9
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ANGPTL2
DMDM Disease mutations23452
Blocks (Seattle)ANGPTL2
SuperfamilyQ9UKU9
Human Protein Atlas [tissue]ENSG00000136859-ANGPTL2 [tissue]
Peptide AtlasQ9UKU9
HPRD05415
IPIIPI00007800   IPI00647861   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKU9
IntAct (EBI)Q9UKU9
FunCoupENSG00000136859
BioGRIDANGPTL2
STRING (EMBL)ANGPTL2
ZODIACANGPTL2
Ontologies - Pathways
QuickGOQ9UKU9
Ontology : AmiGOreceptor binding  extracellular space  multicellular organism development  extracellular exosome  
Ontology : EGO-EBIreceptor binding  extracellular space  multicellular organism development  extracellular exosome  
NDEx NetworkANGPTL2
Atlas of Cancer Signalling NetworkANGPTL2
Wikipedia pathwaysANGPTL2
Orthology - Evolution
OrthoDB23452
GeneTree (enSembl)ENSG00000136859
Phylogenetic Trees/Animal Genes : TreeFamANGPTL2
HOVERGENQ9UKU9
HOGENOMQ9UKU9
Homologs : HomoloGeneANGPTL2
Homology/Alignments : Family Browser (UCSC)ANGPTL2
Gene fusions - Rearrangements
Tumor Fusion PortalANGPTL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANGPTL2
dbVarANGPTL2
ClinVarANGPTL2
1000_GenomesANGPTL2 
Exome Variant ServerANGPTL2
ExAC (Exome Aggregation Consortium)ENSG00000136859
GNOMAD BrowserENSG00000136859
Genetic variants : HAPMAP23452
Genomic Variants (DGV)ANGPTL2 [DGVbeta]
DECIPHERANGPTL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL2 
Mutations
ICGC Data PortalANGPTL2 
TCGA Data PortalANGPTL2 
Broad Tumor PortalANGPTL2
OASIS PortalANGPTL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANGPTL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANGPTL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANGPTL2
DgiDB (Drug Gene Interaction Database)ANGPTL2
DoCM (Curated mutations)ANGPTL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL2 (select a term)
intoGenANGPTL2
Cancer3DANGPTL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605001   
Orphanet
DisGeNETANGPTL2
MedgenANGPTL2
Genetic Testing Registry ANGPTL2
NextProtQ9UKU9 [Medical]
TSGene23452
GENETestsANGPTL2
Target ValidationANGPTL2
Huge Navigator ANGPTL2 [HugePedia]
snp3D : Map Gene to Disease23452
BioCentury BCIQANGPTL2
ClinGenANGPTL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23452
Chemical/Pharm GKB GenePA24795
Clinical trialANGPTL2
Miscellaneous
canSAR (ICR)ANGPTL2 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL2
EVEXANGPTL2
GoPubMedANGPTL2
iHOPANGPTL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:02:58 CET 2017

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