Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANGPTL5 (angiopoietin like 5)

Identity

Alias (NCBI)-
HGNC (Hugo) ANGPTL5
HGNC Previous nameangiopoietin-like 5
LocusID (NCBI) 253935
Atlas_Id 60295
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 101890674 and ends at 101916522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ANGPTL5   19705
Cards
Entrez_Gene (NCBI)ANGPTL5    angiopoietin like 5
Aliases
GeneCards (Weizmann)ANGPTL5
Ensembl hg19 (Hinxton)ENSG00000187151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187151 [Gene_View]  ENSG00000187151 [Sequence]  chr11:101890674-101916522 [Contig_View]  ANGPTL5 [Vega]
ICGC DataPortalENSG00000187151
TCGA cBioPortalANGPTL5
AceView (NCBI)ANGPTL5
Genatlas (Paris)ANGPTL5
SOURCE (Princeton)ANGPTL5
Genetics Home Reference (NIH)ANGPTL5
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL5  -     chr11:101890674-101916522 -  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL5  -     11q22.1   [Description]    (hg19-Feb_2009)
GoldenPathANGPTL5 - 11q22.1 [CytoView hg19]  ANGPTL5 - 11q22.1 [CytoView hg38]
ImmunoBaseENSG00000187151
genome Data Viewer NCBIANGPTL5 [Mapview hg19]  
OMIM607666   
Gene and transcription
Genbank (Entrez)AK291523 AY169281 AY358827 BC049170 BC053957
RefSeq transcript (Entrez)NM_178127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL5
Alternative Splicing GalleryENSG00000187151
Gene ExpressionANGPTL5 [ NCBI-GEO ]   ANGPTL5 [ EBI - ARRAY_EXPRESS ]   ANGPTL5 [ SEEK ]   ANGPTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL5 [ Firebrowse - Broad ]
GenevisibleExpression of ANGPTL5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253935
GTEX Portal (Tissue expression)ANGPTL5
Human Protein AtlasENSG00000187151-ANGPTL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XS5
Splice isoforms : SwissVarQ86XS5
PhosPhoSitePlusQ86XS5
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen-like_C    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ANGPTL5
Blocks (Seattle)ANGPTL5
SuperfamilyQ86XS5
Human Protein Atlas [tissue]ENSG00000187151-ANGPTL5 [tissue]
Peptide AtlasQ86XS5
HPRD09638
IPIIPI00328963   IPI00984776   
Protein Interaction databases
DIP (DOE-UCLA)Q86XS5
IntAct (EBI)Q86XS5
BioGRIDANGPTL5
STRING (EMBL)ANGPTL5
ZODIACANGPTL5
Ontologies - Pathways
QuickGOQ86XS5
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkANGPTL5
Atlas of Cancer Signalling NetworkANGPTL5
Wikipedia pathwaysANGPTL5
Orthology - Evolution
OrthoDB253935
GeneTree (enSembl)ENSG00000187151
Phylogenetic Trees/Animal Genes : TreeFamANGPTL5
HOGENOMQ86XS5
Homologs : HomoloGeneANGPTL5
Homology/Alignments : Family Browser (UCSC)ANGPTL5
Gene fusions - Rearrangements
Fusion : QuiverANGPTL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL5 [hg38]
dbVarANGPTL5
ClinVarANGPTL5
MonarchANGPTL5
1000_GenomesANGPTL5 
Exome Variant ServerANGPTL5
GNOMAD BrowserENSG00000187151
Varsome BrowserANGPTL5
Genomic Variants (DGV)ANGPTL5 [DGVbeta]
DECIPHERANGPTL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL5 
Mutations
ICGC Data PortalANGPTL5 
TCGA Data PortalANGPTL5 
Broad Tumor PortalANGPTL5
OASIS PortalANGPTL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANGPTL5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DANGPTL5
Mutations and Diseases : HGMDANGPTL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANGPTL5
DgiDB (Drug Gene Interaction Database)ANGPTL5
DoCM (Curated mutations)ANGPTL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL5 (select a term)
intoGenANGPTL5
Cancer3DANGPTL5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607666   
Orphanet
DisGeNETANGPTL5
MedgenANGPTL5
Genetic Testing Registry ANGPTL5
NextProtQ86XS5 [Medical]
GENETestsANGPTL5
Target ValidationANGPTL5
Huge Navigator ANGPTL5 [HugePedia]
ClinGenANGPTL5
Clinical trials, drugs, therapy
MyCancerGenomeANGPTL5
Protein Interactions : CTD
Pharm GKB GenePA134944139
Clinical trialANGPTL5
Miscellaneous
canSAR (ICR)ANGPTL5 (select the gene name)
HarmonizomeANGPTL5
DataMed IndexANGPTL5
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL5
EVEXANGPTL5
GoPubMedANGPTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:45:39 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.