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ANGPTL6 (angiopoietin like 6)

Identity

Alias_namesangiopoietin-like 6
Alias_symbol (synonym)ARP5
AGF
Other alias
HGNC (Hugo) ANGPTL6
LocusID (NCBI) 83854
Atlas_Id 49927
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10092339 and ends at 10102657 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANGPTL6   23140
Cards
Entrez_Gene (NCBI)ANGPTL6  83854  angiopoietin like 6
AliasesAGF; ARP5
GeneCards (Weizmann)ANGPTL6
Ensembl hg19 (Hinxton)ENSG00000130812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130812 [Gene_View]  chr19:10092339-10102657 [Contig_View]  ANGPTL6 [Vega]
ICGC DataPortalENSG00000130812
TCGA cBioPortalANGPTL6
AceView (NCBI)ANGPTL6
Genatlas (Paris)ANGPTL6
WikiGenes83854
SOURCE (Princeton)ANGPTL6
Genetics Home Reference (NIH)ANGPTL6
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL6  -     chr19:10092339-10102657 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL6  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblANGPTL6 - 19p13.2 [CytoView hg19]  ANGPTL6 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIANGPTL6 [Mapview hg19]  ANGPTL6 [Mapview hg38]
OMIM609336   
Gene and transcription
Genbank (Entrez)AB054064 AF230330 AY358276 BC142632
RefSeq transcript (Entrez)NM_001321411 NM_031917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL6
Cluster EST : UnigeneHs.712850 [ NCBI ]
CGAP (NCI)Hs.712850
Alternative Splicing GalleryENSG00000130812
Gene ExpressionANGPTL6 [ NCBI-GEO ]   ANGPTL6 [ EBI - ARRAY_EXPRESS ]   ANGPTL6 [ SEEK ]   ANGPTL6 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83854
GTEX Portal (Tissue expression)ANGPTL6
Human Protein AtlasENSG00000130812-ANGPTL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI99
Splice isoforms : SwissVarQ8NI99
PhosPhoSitePlusQ8NI99
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibrinogen_a/b/g_C_dom    Fibrinogen_CS   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ANGPTL6
DMDM Disease mutations83854
Blocks (Seattle)ANGPTL6
SuperfamilyQ8NI99
Human Protein Atlas [tissue]ENSG00000130812-ANGPTL6 [tissue]
Peptide AtlasQ8NI99
HPRD12453
IPIIPI00289346   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI99
IntAct (EBI)Q8NI99
FunCoupENSG00000130812
BioGRIDANGPTL6
STRING (EMBL)ANGPTL6
ZODIACANGPTL6
Ontologies - Pathways
QuickGOQ8NI99
Ontology : AmiGOangiogenesis  secretory granule  cell differentiation  extracellular exosome  
Ontology : EGO-EBIangiogenesis  secretory granule  cell differentiation  extracellular exosome  
NDEx NetworkANGPTL6
Atlas of Cancer Signalling NetworkANGPTL6
Wikipedia pathwaysANGPTL6
Orthology - Evolution
OrthoDB83854
GeneTree (enSembl)ENSG00000130812
Phylogenetic Trees/Animal Genes : TreeFamANGPTL6
HOVERGENQ8NI99
HOGENOMQ8NI99
Homologs : HomoloGeneANGPTL6
Homology/Alignments : Family Browser (UCSC)ANGPTL6
Gene fusions - Rearrangements
Tumor Fusion PortalANGPTL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANGPTL6
dbVarANGPTL6
ClinVarANGPTL6
1000_GenomesANGPTL6 
Exome Variant ServerANGPTL6
ExAC (Exome Aggregation Consortium)ENSG00000130812
GNOMAD BrowserENSG00000130812
Genetic variants : HAPMAP83854
Genomic Variants (DGV)ANGPTL6 [DGVbeta]
DECIPHERANGPTL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL6 
Mutations
ICGC Data PortalANGPTL6 
TCGA Data PortalANGPTL6 
Broad Tumor PortalANGPTL6
OASIS PortalANGPTL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANGPTL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANGPTL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANGPTL6
DgiDB (Drug Gene Interaction Database)ANGPTL6
DoCM (Curated mutations)ANGPTL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL6 (select a term)
intoGenANGPTL6
Cancer3DANGPTL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609336   
Orphanet
DisGeNETANGPTL6
MedgenANGPTL6
Genetic Testing Registry ANGPTL6
NextProtQ8NI99 [Medical]
TSGene83854
GENETestsANGPTL6
Target ValidationANGPTL6
Huge Navigator ANGPTL6 [HugePedia]
snp3D : Map Gene to Disease83854
BioCentury BCIQANGPTL6
ClinGenANGPTL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83854
Chemical/Pharm GKB GenePA134950669
Clinical trialANGPTL6
Miscellaneous
canSAR (ICR)ANGPTL6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL6
EVEXANGPTL6
GoPubMedANGPTL6
iHOPANGPTL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:02:58 CET 2017

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