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ANGPTL7 (angiopoietin like 7)

Identity

Alias_namesangiopoietin-like 7
Alias_symbol (synonym)CDT6
AngX
Other aliasdJ647M16.1
HGNC (Hugo) ANGPTL7
LocusID (NCBI) 10218
Atlas_Id 55273
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11189289 and ends at 11195981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANGPTL7   24078
Cards
Entrez_Gene (NCBI)ANGPTL7  10218  angiopoietin like 7
AliasesAngX; CDT6; dJ647M16.1
GeneCards (Weizmann)ANGPTL7
Ensembl hg19 (Hinxton)ENSG00000171819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171819 [Gene_View]  ENSG00000171819 [Sequence]  chr1:11189289-11195981 [Contig_View]  ANGPTL7 [Vega]
ICGC DataPortalENSG00000171819
TCGA cBioPortalANGPTL7
AceView (NCBI)ANGPTL7
Genatlas (Paris)ANGPTL7
WikiGenes10218
SOURCE (Princeton)ANGPTL7
Genetics Home Reference (NIH)ANGPTL7
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL7  -     chr1:11189289-11195981 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL7  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblANGPTL7 - 1p36.22 [CytoView hg19]  ANGPTL7 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIANGPTL7 [Mapview hg19]  ANGPTL7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593026 AB593027 AK313716 AY358301 BC001881
RefSeq transcript (Entrez)NM_021146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL7
Cluster EST : UnigeneHs.146559 [ NCBI ]
CGAP (NCI)Hs.146559
Alternative Splicing GalleryENSG00000171819
Gene ExpressionANGPTL7 [ NCBI-GEO ]   ANGPTL7 [ EBI - ARRAY_EXPRESS ]   ANGPTL7 [ SEEK ]   ANGPTL7 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10218
GTEX Portal (Tissue expression)ANGPTL7
Human Protein AtlasENSG00000171819-ANGPTL7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43827   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43827  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43827
Splice isoforms : SwissVarO43827
PhosPhoSitePlusO43827
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibrinogen_a/b/g_C_dom   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ANGPTL7
DMDM Disease mutations10218
Blocks (Seattle)ANGPTL7
SuperfamilyO43827
Human Protein Atlas [tissue]ENSG00000171819-ANGPTL7 [tissue]
Peptide AtlasO43827
HPRD10818
IPIIPI00171928   
Protein Interaction databases
DIP (DOE-UCLA)O43827
IntAct (EBI)O43827
FunCoupENSG00000171819
BioGRIDANGPTL7
STRING (EMBL)ANGPTL7
ZODIACANGPTL7
Ontologies - Pathways
QuickGOO43827
Ontology : AmiGOprotein binding  extracellular region  response to oxidative stress  
Ontology : EGO-EBIprotein binding  extracellular region  response to oxidative stress  
NDEx NetworkANGPTL7
Atlas of Cancer Signalling NetworkANGPTL7
Wikipedia pathwaysANGPTL7
Orthology - Evolution
OrthoDB10218
GeneTree (enSembl)ENSG00000171819
Phylogenetic Trees/Animal Genes : TreeFamANGPTL7
HOVERGENO43827
HOGENOMO43827
Homologs : HomoloGeneANGPTL7
Homology/Alignments : Family Browser (UCSC)ANGPTL7
Gene fusions - Rearrangements
Fusion : QuiverANGPTL7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANGPTL7
dbVarANGPTL7
ClinVarANGPTL7
1000_GenomesANGPTL7 
Exome Variant ServerANGPTL7
ExAC (Exome Aggregation Consortium)ENSG00000171819
GNOMAD BrowserENSG00000171819
Genetic variants : HAPMAP10218
Genomic Variants (DGV)ANGPTL7 [DGVbeta]
DECIPHERANGPTL7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL7 
Mutations
ICGC Data PortalANGPTL7 
TCGA Data PortalANGPTL7 
Broad Tumor PortalANGPTL7
OASIS PortalANGPTL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANGPTL7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANGPTL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANGPTL7
DgiDB (Drug Gene Interaction Database)ANGPTL7
DoCM (Curated mutations)ANGPTL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL7 (select a term)
intoGenANGPTL7
Cancer3DANGPTL7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANGPTL7
MedgenANGPTL7
Genetic Testing Registry ANGPTL7
NextProtO43827 [Medical]
TSGene10218
GENETestsANGPTL7
Target ValidationANGPTL7
Huge Navigator ANGPTL7 [HugePedia]
snp3D : Map Gene to Disease10218
BioCentury BCIQANGPTL7
ClinGenANGPTL7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10218
Chemical/Pharm GKB GenePA134959516
Clinical trialANGPTL7
Miscellaneous
canSAR (ICR)ANGPTL7 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL7
EVEXANGPTL7
GoPubMedANGPTL7
iHOPANGPTL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:14:03 CEST 2018

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