Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANGPTL8 (angiopoietin like 8)

Identity

Alias_namesC19orf80
chromosome 19 open reading frame 80
angiopoietin-like 8
Alias_symbol (synonym)TD26
RIFL
Other aliasPRO1185
PVPA599
HGNC (Hugo) ANGPTL8
LocusID (NCBI) 55908
Atlas_Id 56550
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11239619 and ends at 11241943 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANGPTL8   24933
Cards
Entrez_Gene (NCBI)ANGPTL8  55908  angiopoietin like 8
AliasesC19orf80; PRO1185; PVPA599; RIFL; 
TD26
GeneCards (Weizmann)ANGPTL8
Ensembl hg19 (Hinxton)ENSG00000130173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130173 [Gene_View]  chr19:11239619-11241943 [Contig_View]  ANGPTL8 [Vega]
ICGC DataPortalENSG00000130173
TCGA cBioPortalANGPTL8
AceView (NCBI)ANGPTL8
Genatlas (Paris)ANGPTL8
WikiGenes55908
SOURCE (Princeton)ANGPTL8
Genetics Home Reference (NIH)ANGPTL8
Genomic and cartography
GoldenPath hg38 (UCSC)ANGPTL8  -     chr19:11239619-11241943 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANGPTL8  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblANGPTL8 - 19p13.2 [CytoView hg19]  ANGPTL8 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIANGPTL8 [Mapview hg19]  ANGPTL8 [Mapview hg38]
OMIM616223   
Gene and transcription
Genbank (Entrez)AF271350 AY358356 BC113823 BC141563 BC146552
RefSeq transcript (Entrez)NM_018687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANGPTL8
Cluster EST : UnigeneHs.534467 [ NCBI ]
CGAP (NCI)Hs.534467
Alternative Splicing GalleryENSG00000130173
Gene ExpressionANGPTL8 [ NCBI-GEO ]   ANGPTL8 [ EBI - ARRAY_EXPRESS ]   ANGPTL8 [ SEEK ]   ANGPTL8 [ MEM ]
Gene Expression Viewer (FireBrowse)ANGPTL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55908
GTEX Portal (Tissue expression)ANGPTL8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXH0
Splice isoforms : SwissVarQ6UXH0
PhosPhoSitePlusQ6UXH0
Domains : Interpro (EBI)ANGPTL8   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ANGPTL8
DMDM Disease mutations55908
Blocks (Seattle)ANGPTL8
SuperfamilyQ6UXH0
Human Protein AtlasENSG00000130173
Peptide AtlasQ6UXH0
HPRD14245
IPIIPI00742251   IPI00183480   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXH0
IntAct (EBI)Q6UXH0
FunCoupENSG00000130173
BioGRIDANGPTL8
STRING (EMBL)ANGPTL8
ZODIACANGPTL8
Ontologies - Pathways
QuickGOQ6UXH0
Ontology : AmiGOhormone activity  hormone activity  protein binding  extracellular region  extracellular region  positive regulation of protein processing  regulation of lipid metabolic process  lipoprotein metabolic process  cellular lipid metabolic process  type B pancreatic cell proliferation  type B pancreatic cell proliferation  fat cell differentiation  cell maturation  regulation of lipoprotein metabolic process  triglyceride homeostasis  triglyceride homeostasis  
Ontology : EGO-EBIhormone activity  hormone activity  protein binding  extracellular region  extracellular region  positive regulation of protein processing  regulation of lipid metabolic process  lipoprotein metabolic process  cellular lipid metabolic process  type B pancreatic cell proliferation  type B pancreatic cell proliferation  fat cell differentiation  cell maturation  regulation of lipoprotein metabolic process  triglyceride homeostasis  triglyceride homeostasis  
NDEx NetworkANGPTL8
Atlas of Cancer Signalling NetworkANGPTL8
Wikipedia pathwaysANGPTL8
Orthology - Evolution
OrthoDB55908
GeneTree (enSembl)ENSG00000130173
Phylogenetic Trees/Animal Genes : TreeFamANGPTL8
HOVERGENQ6UXH0
HOGENOMQ6UXH0
Homologs : HomoloGeneANGPTL8
Homology/Alignments : Family Browser (UCSC)ANGPTL8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANGPTL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANGPTL8
dbVarANGPTL8
ClinVarANGPTL8
1000_GenomesANGPTL8 
Exome Variant ServerANGPTL8
ExAC (Exome Aggregation Consortium)ANGPTL8 (select the gene name)
Genetic variants : HAPMAP55908
Genomic Variants (DGV)ANGPTL8 [DGVbeta]
DECIPHERANGPTL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANGPTL8 
Mutations
ICGC Data PortalANGPTL8 
TCGA Data PortalANGPTL8 
Broad Tumor PortalANGPTL8
OASIS PortalANGPTL8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANGPTL8
BioMutasearch ANGPTL8
DgiDB (Drug Gene Interaction Database)ANGPTL8
DoCM (Curated mutations)ANGPTL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANGPTL8 (select a term)
intoGenANGPTL8
Cancer3DANGPTL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616223   
Orphanet
MedgenANGPTL8
Genetic Testing Registry ANGPTL8
NextProtQ6UXH0 [Medical]
TSGene55908
GENETestsANGPTL8
Target ValidationANGPTL8
Huge Navigator ANGPTL8 [HugePedia]
snp3D : Map Gene to Disease55908
BioCentury BCIQANGPTL8
ClinGenANGPTL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55908
Chemical/Pharm GKB GenePA166048965
Clinical trialANGPTL8
Miscellaneous
canSAR (ICR)ANGPTL8 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANGPTL8
EVEXANGPTL8
GoPubMedANGPTL8
iHOPANGPTL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:57:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.