Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ANK1 (ankyrin 1)

Identity

Other namesANK
SPH1
SPH2
HGNC (Hugo) ANK1
LocusID (NCBI) 286
Atlas_Id 641
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 41510744 and ends at 41655140 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		ANK1 (8p11.21) / ADAM7 (8p21.2)ANK1 (8p11.21) / FGFR1 (8p11.23)ANK1 (8p11.21) / FUT10 (8p12)
ANK1 (8p11.21) / ZMAT4 (8p11.21)CNEP1R1 (16q12.1) / ANK1 (8p11.21)EFR3A (8q24.22) / ANK1 (8p11.21)
IKBKB (8p11.21) / ANK1 (8p11.21)NECAP1 (12p13.31) / ANK1 (8p11.21)PPFIA3 (19q13.33) / ANK1 (8p11.21)
WHSC1L1 (8p11.23) / ANK1 (8p11.21)ANK1 8p11.21 / ADAM7 8p21.2ANK1 8p11.21 / FUT10 8p12
IKBKB 8p11.21 / ANK1 8p11.21NECAP1 12p13.31 / ANK1 8p11.21PPFIA3 19q13.33 / ANK1 8p11.21
TMEM188 ANK1 8p11.21WHSC1L1 8p11.23 / ANK1 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ANK1   492
Cards
Entrez_Gene (NCBI)ANK1  286  ankyrin 1
AliasesANK; SPH1; SPH2
GeneCards (Weizmann)ANK1
Ensembl hg19 (Hinxton)ENSG00000029534 [Gene_View]  chr8:41510744-41655140 [Contig_View]  ANK1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000029534 [Gene_View]  chr8:41510744-41655140 [Contig_View]  ANK1 [Vega]
ICGC DataPortalENSG00000029534
TCGA cBioPortalANK1
AceView (NCBI)ANK1
Genatlas (Paris)ANK1
WikiGenes286
SOURCE (Princeton)ANK1
Genomic and cartography
GoldenPath hg19 (UCSC)ANK1  -     chr8:41510744-41655140 -  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANK1  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblANK1 - 8p11.21 [CytoView hg19]  ANK1 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIANK1 [Mapview hg19]  ANK1 [Mapview hg38]
OMIM182900   612641   
Gene and transcription
Genbank (Entrez)AA404587 AB209418 AI167814 AI684839 AK126647
RefSeq transcript (Entrez)NM_000037 NM_001142445 NM_001142446 NM_020475 NM_020476 NM_020477 NM_020478 NM_020479 NM_020480 NM_020481
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012820 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)ANK1
Cluster EST : UnigeneHs.708861 [ NCBI ]
CGAP (NCI)Hs.708861
Alternative Splicing GalleryENSG00000029534
Gene ExpressionANK1 [ NCBI-GEO ]   ANK1 [ EBI - ARRAY_EXPRESS ]   ANK1 [ SEEK ]   ANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286
GTEX Portal (Tissue expression)ANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16157 (Uniprot)
NextProtP16157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16157
Splice isoforms : SwissVarP16157 (Swissvar)
PhosPhoSitePlusP16157
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    DEATH_DOMAIN (PS50017)    ZU5 (PS51145)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DEATH-like_dom    Death_domain    ZU5_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    Death (PF00531)    ZU5 (PF00791)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam00531    pfam00791   
Domain families : Smart (EMBL)ANK (SM00248)  DEATH (SM00005)  ZU5 (SM00218)  
DMDM Disease mutations286
Blocks (Seattle)ANK1
PDB (SRS)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
PDB (PDBSum)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
PDB (IMB)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
PDB (RSDB)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
Structural Biology KnowledgeBase1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
SCOP (Structural Classification of Proteins)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
CATH (Classification of proteins structures)1N11    2YQF    2YVI    3F59    3KBT    3KBU    3UD1    3UD2   
SuperfamilyP16157
Human Protein AtlasENSG00000029534
Peptide AtlasP16157
HPRD01693
IPIIPI00216697   IPI00744986   IPI00744846   IPI00747536   IPI00749301   IPI00748895   IPI00748439   IPI00748074   IPI00748154   IPI00007623   IPI00743884   IPI00646300   IPI00007625   IPI00748330   IPI00654646   IPI00297532   IPI00374973   IPI00745348   IPI00744895   IPI00744408   IPI00747552   IPI00984523   IPI00917882   IPI00182779   IPI00878241   IPI00449128   IPI00795357   IPI00980703   
Protein Interaction databases
DIP (DOE-UCLA)P16157
IntAct (EBI)P16157
FunCoupENSG00000029534
BioGRIDANK1
STRING (EMBL)ANK1
ZODIACANK1
Ontologies - Pathways
QuickGOP16157
Ontology : AmiGOstructural molecule activity  structural constituent of cytoskeleton  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  plasma membrane  plasma membrane  exocytosis  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  cytoskeleton organization  signal transduction  cytoskeletal adaptor activity  cytoskeletal adaptor activity  positive regulation of organelle organization  spectrin-associated cytoskeleton  basolateral plasma membrane  sarcoplasmic reticulum  enzyme binding  enzyme binding  Z disc  spectrin binding  spectrin binding  spectrin binding  axolemma  M band  sarcolemma  maintenance of epithelial cell apical/basal polarity  postsynaptic membrane  ATPase binding  protein targeting to plasma membrane  
Ontology : EGO-EBIstructural molecule activity  structural constituent of cytoskeleton  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  plasma membrane  plasma membrane  exocytosis  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  cytoskeleton organization  signal transduction  cytoskeletal adaptor activity  cytoskeletal adaptor activity  positive regulation of organelle organization  spectrin-associated cytoskeleton  basolateral plasma membrane  sarcoplasmic reticulum  enzyme binding  enzyme binding  Z disc  spectrin binding  spectrin binding  spectrin binding  axolemma  M band  sarcolemma  maintenance of epithelial cell apical/basal polarity  postsynaptic membrane  ATPase binding  protein targeting to plasma membrane  
Pathways : BIOCARTASynaptic Proteins at the Synaptic Junction [Genes]   
Pathways : KEGGProteoglycans in cancer   
NDEx NetworkANK1
Atlas of Cancer Signalling NetworkANK1
Wikipedia pathwaysANK1
Orthology - Evolution
OrthoDB286
GeneTree (enSembl)ENSG00000029534
Phylogenetic Trees/Animal Genes : TreeFamANK1
Homologs : HomoloGeneANK1
Homology/Alignments : Family Browser (UCSC)ANK1
Gene fusions - Rearrangements
Fusion: TCGAANK1 8p11.21 ADAM7 8p21.2 BRCA
Fusion: TCGAANK1 8p11.21 FUT10 8p12 OV
Fusion: TCGAIKBKB 8p11.21 ANK1 8p11.21 BRCA
Fusion: TCGANECAP1 12p13.31 ANK1 8p11.21 BLCA
Fusion: TCGAPPFIA3 19q13.33 ANK1 8p11.21 LUSC
Fusion: TCGATMEM188 ANK1 8p11.21 BRCA
Fusion: TCGAWHSC1L1 8p11.23 ANK1 8p11.21 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANK1
dbVarANK1
ClinVarANK1
1000_GenomesANK1 
Exome Variant ServerANK1
ExAC (Exome Aggregation Consortium)ANK1 (select the gene name)
Genetic variants : HAPMAP286
Genomic Variants (DGV)ANK1 [DGVbeta]
Mutations
ICGC Data PortalANK1 
TCGA Data PortalANK1 
Broad Tumor PortalANK1
OASIS PortalANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANK1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANK1
DgiDB (Drug Gene Interaction Database)ANK1
DoCM (Curated mutations)ANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANK1 (select a term)
intoGenANK1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:41510744-41655140  ENSG00000029534
CONAN: Copy Number AnalysisANK1 
Mutations and Diseases : HGMDANK1
OMIM182900    612641   
MedgenANK1
Genetic Testing Registry ANK1
NextProtP16157 [Medical]
TSGene286
GENETestsANK1
Huge Navigator ANK1 [HugePedia]
snp3D : Map Gene to Disease286
BioCentury BCIQANK1
ClinGenANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286
Chemical/Pharm GKB GenePA24798
Clinical trialANK1
Miscellaneous
canSAR (ICR)ANK1 (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANK1
EVEXANK1
GoPubMedANK1
iHOPANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 19 18:36:30 CEST 2016
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