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ANKDD1A (ankyrin repeat and death domain containing 1A)

Identity

Alias_symbol (synonym)FLJ25870
Other alias-
HGNC (Hugo) ANKDD1A
LocusID (NCBI) 348094
Atlas_Id 60299
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65204101 and ends at 65251041 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
A1CF (10q11.23) / ANKDD1A (15q22.31)ANKDD1A (15q22.31) / NEAT1 (11q13.1)ANKDD1A (15q22.31) / TNKS1BP1 (11q12.1)
CROCCP2 (1p36.13) / ANKDD1A (15q22.31)PLEKHO2 (15q22.31) / ANKDD1A (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKDD1A   28002
Cards
Entrez_Gene (NCBI)ANKDD1A  348094  ankyrin repeat and death domain containing 1A
Aliases
GeneCards (Weizmann)ANKDD1A
Ensembl hg19 (Hinxton)ENSG00000166839 [Gene_View]  chr15:65204101-65251041 [Contig_View]  ANKDD1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000166839 [Gene_View]  chr15:65204101-65251041 [Contig_View]  ANKDD1A [Vega]
ICGC DataPortalENSG00000166839
TCGA cBioPortalANKDD1A
AceView (NCBI)ANKDD1A
Genatlas (Paris)ANKDD1A
WikiGenes348094
SOURCE (Princeton)ANKDD1A
Genetics Home Reference (NIH)ANKDD1A
Genomic and cartography
GoldenPath hg19 (UCSC)ANKDD1A  -     chr15:65204101-65251041 +  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKDD1A  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblANKDD1A - 15q22.31 [CytoView hg19]  ANKDD1A - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIANKDD1A [Mapview hg19]  ANKDD1A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075298 AK098736 AK307698 BC027350 BC042002
RefSeq transcript (Entrez)NM_182703
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)ANKDD1A
Cluster EST : UnigeneHs.207157 [ NCBI ]
CGAP (NCI)Hs.207157
Alternative Splicing GalleryENSG00000166839
Gene ExpressionANKDD1A [ NCBI-GEO ]   ANKDD1A [ EBI - ARRAY_EXPRESS ]   ANKDD1A [ SEEK ]   ANKDD1A [ MEM ]
Gene Expression Viewer (FireBrowse)ANKDD1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348094
GTEX Portal (Tissue expression)ANKDD1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495B1
Splice isoforms : SwissVarQ495B1
PhosPhoSitePlusQ495B1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    DEATH_DOMAIN (PS50017)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DEATH-like_dom    Death_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Death (PF00531)   
Domain families : Pfam (NCBI)pfam12796    pfam00531   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKDD1A
DMDM Disease mutations348094
Blocks (Seattle)ANKDD1A
SuperfamilyQ495B1
Human Protein AtlasENSG00000166839
Peptide AtlasQ495B1
HPRD14178
IPIIPI00746022   IPI00642138   IPI00420011   IPI00954963   IPI00178293   IPI01019084   IPI00965832   IPI00966885   
Protein Interaction databases
DIP (DOE-UCLA)Q495B1
IntAct (EBI)Q495B1
FunCoupENSG00000166839
BioGRIDANKDD1A
STRING (EMBL)ANKDD1A
ZODIACANKDD1A
Ontologies - Pathways
QuickGOQ495B1
Ontology : AmiGOsignal transduction  
Ontology : EGO-EBIsignal transduction  
NDEx NetworkANKDD1A
Atlas of Cancer Signalling NetworkANKDD1A
Wikipedia pathwaysANKDD1A
Orthology - Evolution
OrthoDB348094
GeneTree (enSembl)ENSG00000166839
Phylogenetic Trees/Animal Genes : TreeFamANKDD1A
HOVERGENQ495B1
HOGENOMQ495B1
Homologs : HomoloGeneANKDD1A
Homology/Alignments : Family Browser (UCSC)ANKDD1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKDD1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKDD1A
dbVarANKDD1A
ClinVarANKDD1A
1000_GenomesANKDD1A 
Exome Variant ServerANKDD1A
ExAC (Exome Aggregation Consortium)ANKDD1A (select the gene name)
Genetic variants : HAPMAP348094
Genomic Variants (DGV)ANKDD1A [DGVbeta]
DECIPHER (Syndromes)15:65204101-65251041  ENSG00000166839
CONAN: Copy Number AnalysisANKDD1A 
Mutations
ICGC Data PortalANKDD1A 
TCGA Data PortalANKDD1A 
Broad Tumor PortalANKDD1A
OASIS PortalANKDD1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKDD1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKDD1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKDD1A
DgiDB (Drug Gene Interaction Database)ANKDD1A
DoCM (Curated mutations)ANKDD1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKDD1A (select a term)
intoGenANKDD1A
Cancer3DANKDD1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKDD1A
Genetic Testing Registry ANKDD1A
NextProtQ495B1 [Medical]
TSGene348094
GENETestsANKDD1A
Huge Navigator ANKDD1A [HugePedia]
snp3D : Map Gene to Disease348094
BioCentury BCIQANKDD1A
ClinGenANKDD1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348094
Chemical/Pharm GKB GenePA143485299
Clinical trialANKDD1A
Miscellaneous
canSAR (ICR)ANKDD1A (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKDD1A
EVEXANKDD1A
GoPubMedANKDD1A
iHOPANKDD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:16 CET 2017

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