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ANKDD1B (ankyrin repeat and death domain containing 1B)

Identity

Other alias-
HGNC (Hugo) ANKDD1B
LocusID (NCBI) 728780
Atlas_Id 60300
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 75611476 and ends at 75671846 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKDD1B   32525
Cards
Entrez_Gene (NCBI)ANKDD1B  728780  ankyrin repeat and death domain containing 1B
Aliases
GeneCards (Weizmann)ANKDD1B
Ensembl hg19 (Hinxton)ENSG00000189045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189045 [Gene_View]  chr5:75611476-75671846 [Contig_View]  ANKDD1B [Vega]
ICGC DataPortalENSG00000189045
TCGA cBioPortalANKDD1B
AceView (NCBI)ANKDD1B
Genatlas (Paris)ANKDD1B
WikiGenes728780
SOURCE (Princeton)ANKDD1B
Genetics Home Reference (NIH)ANKDD1B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKDD1B  -     chr5:75611476-75671846 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKDD1B  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblANKDD1B - 5q13.3 [CytoView hg19]  ANKDD1B - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIANKDD1B [Mapview hg19]  ANKDD1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307154
RefSeq transcript (Entrez)NM_001271529 NM_001276713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKDD1B
Cluster EST : UnigeneHs.370455 [ NCBI ]
CGAP (NCI)Hs.370455
Alternative Splicing GalleryENSG00000189045
Gene ExpressionANKDD1B [ NCBI-GEO ]   ANKDD1B [ EBI - ARRAY_EXPRESS ]   ANKDD1B [ SEEK ]   ANKDD1B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKDD1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728780
GTEX Portal (Tissue expression)ANKDD1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHY2
Splice isoforms : SwissVarA6NHY2
PhosPhoSitePlusA6NHY2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    DEATH_DOMAIN (PS50017)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DEATH-like_dom    Death_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKDD1B
DMDM Disease mutations728780
Blocks (Seattle)ANKDD1B
SuperfamilyA6NHY2
Human Protein AtlasENSG00000189045
Peptide AtlasA6NHY2
IPIIPI00376587   IPI01026552   
Protein Interaction databases
DIP (DOE-UCLA)A6NHY2
IntAct (EBI)A6NHY2
FunCoupENSG00000189045
BioGRIDANKDD1B
STRING (EMBL)ANKDD1B
ZODIACANKDD1B
Ontologies - Pathways
QuickGOA6NHY2
Ontology : AmiGOsignal transduction  
Ontology : EGO-EBIsignal transduction  
NDEx NetworkANKDD1B
Atlas of Cancer Signalling NetworkANKDD1B
Wikipedia pathwaysANKDD1B
Orthology - Evolution
OrthoDB728780
GeneTree (enSembl)ENSG00000189045
Phylogenetic Trees/Animal Genes : TreeFamANKDD1B
HOVERGENA6NHY2
HOGENOMA6NHY2
Homologs : HomoloGeneANKDD1B
Homology/Alignments : Family Browser (UCSC)ANKDD1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKDD1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKDD1B
dbVarANKDD1B
ClinVarANKDD1B
1000_GenomesANKDD1B 
Exome Variant ServerANKDD1B
ExAC (Exome Aggregation Consortium)ANKDD1B (select the gene name)
Genetic variants : HAPMAP728780
Genomic Variants (DGV)ANKDD1B [DGVbeta]
DECIPHERANKDD1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKDD1B 
Mutations
ICGC Data PortalANKDD1B 
TCGA Data PortalANKDD1B 
Broad Tumor PortalANKDD1B
OASIS PortalANKDD1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKDD1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKDD1B
DgiDB (Drug Gene Interaction Database)ANKDD1B
DoCM (Curated mutations)ANKDD1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKDD1B (select a term)
intoGenANKDD1B
Cancer3DANKDD1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKDD1B
Genetic Testing Registry ANKDD1B
NextProtA6NHY2 [Medical]
TSGene728780
GENETestsANKDD1B
Target ValidationANKDD1B
Huge Navigator ANKDD1B [HugePedia]
snp3D : Map Gene to Disease728780
BioCentury BCIQANKDD1B
ClinGenANKDD1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728780
Chemical/Pharm GKB GenePA143485300
Clinical trialANKDD1B
Miscellaneous
canSAR (ICR)ANKDD1B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKDD1B
EVEXANKDD1B
GoPubMedANKDD1B
iHOPANKDD1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:04 CEST 2017

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