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ANKEF1 (ankyrin repeat and EF-hand domain containing 1)

Identity

Alias_namesANKRD5
ankyrin repeat domain 5
Alias_symbol (synonym)FLJ21669
dJ839B4.6
Other alias
HGNC (Hugo) ANKEF1
LocusID (NCBI) 63926
Atlas_Id 60301
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 10034999 and ends at 10056762 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKEF1   15803
Cards
Entrez_Gene (NCBI)ANKEF1  63926  ankyrin repeat and EF-hand domain containing 1
AliasesANKRD5
GeneCards (Weizmann)ANKEF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:10034999-10056762 [Contig_View]  ANKEF1 [Vega]
TCGA cBioPortalANKEF1
AceView (NCBI)ANKEF1
Genatlas (Paris)ANKEF1
WikiGenes63926
SOURCE (Princeton)ANKEF1
Genetics Home Reference (NIH)ANKEF1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKEF1  -     chr20:10034999-10056762 +  20p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKEF1  -     20p12.2   [Description]    (hg19-Feb_2009)
EnsemblANKEF1 - 20p12.2 [CytoView hg19]  ANKEF1 - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBIANKEF1 [Mapview hg19]  ANKEF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025322 AK074463 AK097689 BC011591 BC022878
RefSeq transcript (Entrez)NM_001303472 NM_022096 NM_198798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKEF1
Cluster EST : UnigeneHs.70903 [ NCBI ]
CGAP (NCI)Hs.70903
Gene ExpressionANKEF1 [ NCBI-GEO ]   ANKEF1 [ EBI - ARRAY_EXPRESS ]   ANKEF1 [ SEEK ]   ANKEF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKEF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63926
GTEX Portal (Tissue expression)ANKEF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NU02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NU02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NU02
Splice isoforms : SwissVarQ9NU02
PhosPhoSitePlusQ9NU02
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKEF1
DMDM Disease mutations63926
Blocks (Seattle)ANKEF1
SuperfamilyQ9NU02
Peptide AtlasQ9NU02
HPRD10652
IPIIPI00300452   
Protein Interaction databases
DIP (DOE-UCLA)Q9NU02
IntAct (EBI)Q9NU02
BioGRIDANKEF1
STRING (EMBL)ANKEF1
ZODIACANKEF1
Ontologies - Pathways
QuickGOQ9NU02
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkANKEF1
Atlas of Cancer Signalling NetworkANKEF1
Wikipedia pathwaysANKEF1
Orthology - Evolution
OrthoDB63926
Phylogenetic Trees/Animal Genes : TreeFamANKEF1
HOVERGENQ9NU02
HOGENOMQ9NU02
Homologs : HomoloGeneANKEF1
Homology/Alignments : Family Browser (UCSC)ANKEF1
Gene fusions - Rearrangements
Tumor Fusion PortalANKEF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKEF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKEF1
dbVarANKEF1
ClinVarANKEF1
1000_GenomesANKEF1 
Exome Variant ServerANKEF1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP63926
Genomic Variants (DGV)ANKEF1 [DGVbeta]
DECIPHERANKEF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKEF1 
Mutations
ICGC Data PortalANKEF1 
TCGA Data PortalANKEF1 
Broad Tumor PortalANKEF1
OASIS PortalANKEF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKEF1
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKEF1
DgiDB (Drug Gene Interaction Database)ANKEF1
DoCM (Curated mutations)ANKEF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKEF1 (select a term)
intoGenANKEF1
Cancer3DANKEF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKEF1
MedgenANKEF1
Genetic Testing Registry ANKEF1
NextProtQ9NU02 [Medical]
TSGene63926
GENETestsANKEF1
Target ValidationANKEF1
Huge Navigator ANKEF1 [HugePedia]
snp3D : Map Gene to Disease63926
BioCentury BCIQANKEF1
ClinGenANKEF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63926
Chemical/Pharm GKB GenePA24806
Clinical trialANKEF1
Miscellaneous
canSAR (ICR)ANKEF1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKEF1
EVEXANKEF1
GoPubMedANKEF1
iHOPANKEF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:11 CET 2017

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