Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANKFN1 (ankyrin repeat and fibronectin type III domain containing 1)

Identity

Alias_symbol (synonym)FLJ38335
Other alias-
HGNC (Hugo) ANKFN1
LocusID (NCBI) 162282
Atlas_Id 60302
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 56153475 and ends at 56482646 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKAP1 (17q22) / ANKFN1 (17q22)ANKFN1 (17q22) / SYBU (8q23.2)ARRB1 (11q13.4) / ANKFN1 (17q22)
GPC1 (2q37.3) / ANKFN1 (17q22)NF1 (17q11.2) / ANKFN1 (17q22)RPTOR (17q25.3) / ANKFN1 (17q22)
TANC2 (17q23.2) / ANKFN1 (17q22)NF1 ANKFN1TANC2 ANKFN1
AKAP1 ANKFN1RPTOR ANKFN1ARRB1 ANKFN1
GPC1 ANKFN1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKFN1   26766
Cards
Entrez_Gene (NCBI)ANKFN1  162282  ankyrin repeat and fibronectin type III domain containing 1
Aliases
GeneCards (Weizmann)ANKFN1
Ensembl hg19 (Hinxton)ENSG00000153930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153930 [Gene_View]  chr17:56153475-56482646 [Contig_View]  ANKFN1 [Vega]
ICGC DataPortalENSG00000153930
TCGA cBioPortalANKFN1
AceView (NCBI)ANKFN1
Genatlas (Paris)ANKFN1
WikiGenes162282
SOURCE (Princeton)ANKFN1
Genetics Home Reference (NIH)ANKFN1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKFN1  -     chr17:56153475-56482646 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKFN1  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblANKFN1 - 17q22 [CytoView hg19]  ANKFN1 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIANKFN1 [Mapview hg19]  ANKFN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095654
RefSeq transcript (Entrez)NM_153228
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKFN1
Cluster EST : UnigeneHs.673040 [ NCBI ]
CGAP (NCI)Hs.673040
Alternative Splicing GalleryENSG00000153930
Gene ExpressionANKFN1 [ NCBI-GEO ]   ANKFN1 [ EBI - ARRAY_EXPRESS ]   ANKFN1 [ SEEK ]   ANKFN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKFN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162282
GTEX Portal (Tissue expression)ANKFN1
Human Protein AtlasENSG00000153930-ANKFN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N957   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N957  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N957
Splice isoforms : SwissVarQ8N957
PhosPhoSitePlusQ8N957
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    FN3 (PS50853)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)ANK (SM00248)  FN3 (SM00060)  
Conserved Domain (NCBI)ANKFN1
DMDM Disease mutations162282
Blocks (Seattle)ANKFN1
SuperfamilyQ8N957
Human Protein Atlas [tissue]ENSG00000153930-ANKFN1 [tissue]
Peptide AtlasQ8N957
HPRD08238
IPIIPI00167602   
Protein Interaction databases
DIP (DOE-UCLA)Q8N957
IntAct (EBI)Q8N957
FunCoupENSG00000153930
BioGRIDANKFN1
STRING (EMBL)ANKFN1
ZODIACANKFN1
Ontologies - Pathways
QuickGOQ8N957
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKFN1
Atlas of Cancer Signalling NetworkANKFN1
Wikipedia pathwaysANKFN1
Orthology - Evolution
OrthoDB162282
GeneTree (enSembl)ENSG00000153930
Phylogenetic Trees/Animal Genes : TreeFamANKFN1
HOVERGENQ8N957
HOGENOMQ8N957
Homologs : HomoloGeneANKFN1
Homology/Alignments : Family Browser (UCSC)ANKFN1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCNF1 ANKFN1
Fusion: TCGA_MDACCTANC2 ANKFN1
Fusion: TCGA_MDACCAKAP1 ANKFN1
Fusion: TCGA_MDACCRPTOR ANKFN1
Fusion: TCGA_MDACCARRB1 ANKFN1
Fusion: TCGA_MDACCGPC1 ANKFN1
Tumor Fusion PortalANKFN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKFN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKFN1
dbVarANKFN1
ClinVarANKFN1
1000_GenomesANKFN1 
Exome Variant ServerANKFN1
ExAC (Exome Aggregation Consortium)ENSG00000153930
GNOMAD BrowserENSG00000153930
Genetic variants : HAPMAP162282
Genomic Variants (DGV)ANKFN1 [DGVbeta]
DECIPHERANKFN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKFN1 
Mutations
ICGC Data PortalANKFN1 
TCGA Data PortalANKFN1 
Broad Tumor PortalANKFN1
OASIS PortalANKFN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKFN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKFN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKFN1
DgiDB (Drug Gene Interaction Database)ANKFN1
DoCM (Curated mutations)ANKFN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKFN1 (select a term)
intoGenANKFN1
Cancer3DANKFN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKFN1
MedgenANKFN1
Genetic Testing Registry ANKFN1
NextProtQ8N957 [Medical]
TSGene162282
GENETestsANKFN1
Target ValidationANKFN1
Huge Navigator ANKFN1 [HugePedia]
snp3D : Map Gene to Disease162282
BioCentury BCIQANKFN1
ClinGenANKFN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162282
Chemical/Pharm GKB GenePA142672624
Clinical trialANKFN1
Miscellaneous
canSAR (ICR)ANKFN1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKFN1
EVEXANKFN1
GoPubMedANKFN1
iHOPANKFN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.