Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ANKIB1 (ankyrin repeat and IBR domain containing 1)

Identity

Alias_symbol (synonym)DKFZP434A0225
KIAA1386
Other alias-
HGNC (Hugo) ANKIB1
LocusID (NCBI) 54467
Atlas_Id 60304
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 91875548 and ends at 92030698 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKIB1 (7q21.2) / ANKIB1 (7q21.2)ANKIB1 (7q21.2) / PSAT1 (9q21.2)ANKIB1 (7q21.2) / PTPRN2 (7q36.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKIB1   22215
Cards
Entrez_Gene (NCBI)ANKIB1  54467  ankyrin repeat and IBR domain containing 1
Aliases
GeneCards (Weizmann)ANKIB1
Ensembl hg19 (Hinxton)ENSG00000001629 [Gene_View]  chr7:91875548-92030698 [Contig_View]  ANKIB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000001629 [Gene_View]  chr7:91875548-92030698 [Contig_View]  ANKIB1 [Vega]
ICGC DataPortalENSG00000001629
TCGA cBioPortalANKIB1
AceView (NCBI)ANKIB1
Genatlas (Paris)ANKIB1
WikiGenes54467
SOURCE (Princeton)ANKIB1
Genetics Home Reference (NIH)ANKIB1
Genomic and cartography
GoldenPath hg19 (UCSC)ANKIB1  -     chr7:91875548-92030698 +  7q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKIB1  -     7q21.2   [Description]    (hg38-Dec_2013)
EnsemblANKIB1 - 7q21.2 [CytoView hg19]  ANKIB1 - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBIANKIB1 [Mapview hg19]  ANKIB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037807 AK001179 AK025475 AK057685 AL137349
RefSeq transcript (Entrez)NM_019004
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ANKIB1
Cluster EST : UnigeneHs.83293 [ NCBI ]
CGAP (NCI)Hs.83293
Alternative Splicing GalleryENSG00000001629
Gene ExpressionANKIB1 [ NCBI-GEO ]   ANKIB1 [ EBI - ARRAY_EXPRESS ]   ANKIB1 [ SEEK ]   ANKIB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKIB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54467
GTEX Portal (Tissue expression)ANKIB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2G1
Splice isoforms : SwissVarQ9P2G1
PhosPhoSitePlusQ9P2G1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    UIM (PS50330)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ubiquitin-int_motif    Znf_C6HC    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    IBR (PF01485)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam01485   
Domain families : Smart (EMBL)ANK (SM00248)  IBR (SM00647)  RING (SM00184)  UIM (SM00726)  
Conserved Domain (NCBI)ANKIB1
DMDM Disease mutations54467
Blocks (Seattle)ANKIB1
SuperfamilyQ9P2G1
Human Protein AtlasENSG00000001629
Peptide AtlasQ9P2G1
IPIIPI00292914   IPI00924994   IPI00925650   IPI00926050   IPI00926262   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2G1
IntAct (EBI)Q9P2G1
FunCoupENSG00000001629
BioGRIDANKIB1
STRING (EMBL)ANKIB1
ZODIACANKIB1
Ontologies - Pathways
QuickGOQ9P2G1
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkANKIB1
Atlas of Cancer Signalling NetworkANKIB1
Wikipedia pathwaysANKIB1
Orthology - Evolution
OrthoDB54467
GeneTree (enSembl)ENSG00000001629
Phylogenetic Trees/Animal Genes : TreeFamANKIB1
HOVERGENQ9P2G1
HOGENOMQ9P2G1
Homologs : HomoloGeneANKIB1
Homology/Alignments : Family Browser (UCSC)ANKIB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKIB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKIB1
dbVarANKIB1
ClinVarANKIB1
1000_GenomesANKIB1 
Exome Variant ServerANKIB1
ExAC (Exome Aggregation Consortium)ANKIB1 (select the gene name)
Genetic variants : HAPMAP54467
Genomic Variants (DGV)ANKIB1 [DGVbeta]
DECIPHER (Syndromes)7:91875548-92030698  ENSG00000001629
CONAN: Copy Number AnalysisANKIB1 
Mutations
ICGC Data PortalANKIB1 
TCGA Data PortalANKIB1 
Broad Tumor PortalANKIB1
OASIS PortalANKIB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKIB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKIB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKIB1
DgiDB (Drug Gene Interaction Database)ANKIB1
DoCM (Curated mutations)ANKIB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKIB1 (select a term)
intoGenANKIB1
Cancer3DANKIB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKIB1
Genetic Testing Registry ANKIB1
NextProtQ9P2G1 [Medical]
TSGene54467
GENETestsANKIB1
Huge Navigator ANKIB1 [HugePedia]
snp3D : Map Gene to Disease54467
BioCentury BCIQANKIB1
ClinGenANKIB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54467
Chemical/Pharm GKB GenePA134941469
Clinical trialANKIB1
Miscellaneous
canSAR (ICR)ANKIB1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKIB1
EVEXANKIB1
GoPubMedANKIB1
iHOPANKIB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:17 CET 2017

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