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ANKMY1 (ankyrin repeat and MYND domain containing 1)

Identity

Alias_symbol (synonym)FLJ20499
ZMYND13
Other alias
HGNC (Hugo) ANKMY1
LocusID (NCBI) 51281
Atlas_Id 60307
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 240479422 and ends at 240558021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKMY1 (2q37.3) / SIK3 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKMY1   20987
Cards
Entrez_Gene (NCBI)ANKMY1  51281  ankyrin repeat and MYND domain containing 1
AliasesZMYND13
GeneCards (Weizmann)ANKMY1
Ensembl hg19 (Hinxton)ENSG00000144504 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144504 [Gene_View]  chr2:240479422-240558021 [Contig_View]  ANKMY1 [Vega]
ICGC DataPortalENSG00000144504
TCGA cBioPortalANKMY1
AceView (NCBI)ANKMY1
Genatlas (Paris)ANKMY1
WikiGenes51281
SOURCE (Princeton)ANKMY1
Genetics Home Reference (NIH)ANKMY1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKMY1  -     chr2:240479422-240558021 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKMY1  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblANKMY1 - 2q37.3 [CytoView hg19]  ANKMY1 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIANKMY1 [Mapview hg19]  ANKMY1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB034636 AK000506 AK056511 AK124879 AK125881
RefSeq transcript (Entrez)NM_001282771 NM_001282780 NM_001282781 NM_001308375 NM_016552 NM_017844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKMY1
Cluster EST : UnigeneHs.656615 [ NCBI ]
CGAP (NCI)Hs.656615
Alternative Splicing GalleryENSG00000144504
Gene ExpressionANKMY1 [ NCBI-GEO ]   ANKMY1 [ EBI - ARRAY_EXPRESS ]   ANKMY1 [ SEEK ]   ANKMY1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKMY1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51281
GTEX Portal (Tissue expression)ANKMY1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2S6
Splice isoforms : SwissVarQ9P2S6
PhosPhoSitePlusQ9P2S6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    MORN    Znf_MYND   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    MORN (PF02493)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam12796    pfam02493    pfam01753   
Domain families : Smart (EMBL)ANK (SM00248)  MORN (SM00698)  
Conserved Domain (NCBI)ANKMY1
DMDM Disease mutations51281
Blocks (Seattle)ANKMY1
SuperfamilyQ9P2S6
Human Protein AtlasENSG00000144504
Peptide AtlasQ9P2S6
HPRD10646
IPIIPI00303117   IPI00743539   IPI00303118   IPI00967373   IPI00894535   IPI00554512   IPI00871703   IPI00894240   IPI00893979   IPI00893577   IPI00893717   IPI00893297   IPI00892794   IPI00640232   IPI00892646   IPI00894329   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2S6
IntAct (EBI)Q9P2S6
FunCoupENSG00000144504
BioGRIDANKMY1
STRING (EMBL)ANKMY1
ZODIACANKMY1
Ontologies - Pathways
QuickGOQ9P2S6
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkANKMY1
Atlas of Cancer Signalling NetworkANKMY1
Wikipedia pathwaysANKMY1
Orthology - Evolution
OrthoDB51281
GeneTree (enSembl)ENSG00000144504
Phylogenetic Trees/Animal Genes : TreeFamANKMY1
HOVERGENQ9P2S6
HOGENOMQ9P2S6
Homologs : HomoloGeneANKMY1
Homology/Alignments : Family Browser (UCSC)ANKMY1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKMY1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKMY1
dbVarANKMY1
ClinVarANKMY1
1000_GenomesANKMY1 
Exome Variant ServerANKMY1
ExAC (Exome Aggregation Consortium)ANKMY1 (select the gene name)
Genetic variants : HAPMAP51281
Genomic Variants (DGV)ANKMY1 [DGVbeta]
DECIPHERANKMY1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKMY1 
Mutations
ICGC Data PortalANKMY1 
TCGA Data PortalANKMY1 
Broad Tumor PortalANKMY1
OASIS PortalANKMY1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKMY1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKMY1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKMY1
DgiDB (Drug Gene Interaction Database)ANKMY1
DoCM (Curated mutations)ANKMY1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKMY1 (select a term)
intoGenANKMY1
Cancer3DANKMY1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKMY1
Genetic Testing Registry ANKMY1
NextProtQ9P2S6 [Medical]
TSGene51281
GENETestsANKMY1
Target ValidationANKMY1
Huge Navigator ANKMY1 [HugePedia]
snp3D : Map Gene to Disease51281
BioCentury BCIQANKMY1
ClinGenANKMY1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51281
Chemical/Pharm GKB GenePA134925670
Clinical trialANKMY1
Miscellaneous
canSAR (ICR)ANKMY1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKMY1
EVEXANKMY1
GoPubMedANKMY1
iHOPANKMY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:06 CEST 2017

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