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ANKMY2 (ankyrin repeat and MYND domain containing 2)

Identity

Alias_symbol (synonym)DKFZP564O043
ZMYND20
Other alias
HGNC (Hugo) ANKMY2
LocusID (NCBI) 57037
Atlas_Id 54122
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16599776 and ends at 16645817 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKMY2 (7p21.1) / ISPD (7p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ANKMY2   25370
Cards
Entrez_Gene (NCBI)ANKMY2  57037  ankyrin repeat and MYND domain containing 2
AliasesZMYND20
GeneCards (Weizmann)ANKMY2
Ensembl hg19 (Hinxton)ENSG00000106524 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106524 [Gene_View]  chr7:16599776-16645817 [Contig_View]  ANKMY2 [Vega]
ICGC DataPortalENSG00000106524
TCGA cBioPortalANKMY2
AceView (NCBI)ANKMY2
Genatlas (Paris)ANKMY2
WikiGenes57037
SOURCE (Princeton)ANKMY2
Genetics Home Reference (NIH)ANKMY2
Genomic and cartography
GoldenPath hg38 (UCSC)ANKMY2  -     chr7:16599776-16645817 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKMY2  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblANKMY2 - 7p21.1 [CytoView hg19]  ANKMY2 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBIANKMY2 [Mapview hg19]  ANKMY2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001389 AK001740 AK023704 AL050390 BC015453
RefSeq transcript (Entrez)NM_020319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKMY2
Cluster EST : UnigeneHs.157378 [ NCBI ]
CGAP (NCI)Hs.157378
Alternative Splicing GalleryENSG00000106524
Gene ExpressionANKMY2 [ NCBI-GEO ]   ANKMY2 [ EBI - ARRAY_EXPRESS ]   ANKMY2 [ SEEK ]   ANKMY2 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKMY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57037
GTEX Portal (Tissue expression)ANKMY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV38
Splice isoforms : SwissVarQ8IV38
PhosPhoSitePlusQ8IV38
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Znf_MYND   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam12796    pfam01753   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKMY2
DMDM Disease mutations57037
Blocks (Seattle)ANKMY2
SuperfamilyQ8IV38
Human Protein AtlasENSG00000106524
Peptide AtlasQ8IV38
HPRD12454
IPIIPI00216856   IPI00893555   IPI00893706   IPI00894366   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV38
IntAct (EBI)Q8IV38
FunCoupENSG00000106524
BioGRIDANKMY2
STRING (EMBL)ANKMY2
ZODIACANKMY2
Ontologies - Pathways
QuickGOQ8IV38
Ontology : AmiGOprotein binding  cilium  regulation of smoothened signaling pathway  enzyme binding  metal ion binding  
Ontology : EGO-EBIprotein binding  cilium  regulation of smoothened signaling pathway  enzyme binding  metal ion binding  
NDEx NetworkANKMY2
Atlas of Cancer Signalling NetworkANKMY2
Wikipedia pathwaysANKMY2
Orthology - Evolution
OrthoDB57037
GeneTree (enSembl)ENSG00000106524
Phylogenetic Trees/Animal Genes : TreeFamANKMY2
HOVERGENQ8IV38
HOGENOMQ8IV38
Homologs : HomoloGeneANKMY2
Homology/Alignments : Family Browser (UCSC)ANKMY2
Gene fusions - Rearrangements
Fusion : MitelmanANKMY2/ISPD [7p21.1/7p21.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKMY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKMY2
dbVarANKMY2
ClinVarANKMY2
1000_GenomesANKMY2 
Exome Variant ServerANKMY2
ExAC (Exome Aggregation Consortium)ANKMY2 (select the gene name)
Genetic variants : HAPMAP57037
Genomic Variants (DGV)ANKMY2 [DGVbeta]
DECIPHERANKMY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKMY2 
Mutations
ICGC Data PortalANKMY2 
TCGA Data PortalANKMY2 
Broad Tumor PortalANKMY2
OASIS PortalANKMY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKMY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKMY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKMY2
DgiDB (Drug Gene Interaction Database)ANKMY2
DoCM (Curated mutations)ANKMY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKMY2 (select a term)
intoGenANKMY2
Cancer3DANKMY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKMY2
Genetic Testing Registry ANKMY2
NextProtQ8IV38 [Medical]
TSGene57037
GENETestsANKMY2
Target ValidationANKMY2
Huge Navigator ANKMY2 [HugePedia]
snp3D : Map Gene to Disease57037
BioCentury BCIQANKMY2
ClinGenANKMY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57037
Chemical/Pharm GKB GenePA134893861
Clinical trialANKMY2
Miscellaneous
canSAR (ICR)ANKMY2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKMY2
EVEXANKMY2
GoPubMedANKMY2
iHOPANKMY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:54:58 CEST 2017

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