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ANKRA2 (ankyrin repeat family A member 2)

Identity

Alias_namesankyrin repeat, family A (RFXANK-like), 2
Other aliasANKRA
HGNC (Hugo) ANKRA2
LocusID (NCBI) 57763
Atlas_Id 60308
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73552200 and ends at 73565686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM232 (5q22.1) / ANKRA2 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRA2   13208
Cards
Entrez_Gene (NCBI)ANKRA2  57763  ankyrin repeat family A member 2
AliasesANKRA
GeneCards (Weizmann)ANKRA2
Ensembl hg19 (Hinxton)ENSG00000164331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164331 [Gene_View]  chr5:73552200-73565686 [Contig_View]  ANKRA2 [Vega]
ICGC DataPortalENSG00000164331
TCGA cBioPortalANKRA2
AceView (NCBI)ANKRA2
Genatlas (Paris)ANKRA2
WikiGenes57763
SOURCE (Princeton)ANKRA2
Genetics Home Reference (NIH)ANKRA2
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRA2  -     chr5:73552200-73565686 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRA2  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblANKRA2 - 5q13.2 [CytoView hg19]  ANKRA2 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIANKRA2 [Mapview hg19]  ANKRA2 [Mapview hg38]
OMIM605787   
Gene and transcription
Genbank (Entrez)AF251051 AF314032 AK022876 AL558295 BC012917
RefSeq transcript (Entrez)NM_023039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRA2
Cluster EST : UnigeneHs.239154 [ NCBI ]
CGAP (NCI)Hs.239154
Alternative Splicing GalleryENSG00000164331
Gene ExpressionANKRA2 [ NCBI-GEO ]   ANKRA2 [ EBI - ARRAY_EXPRESS ]   ANKRA2 [ SEEK ]   ANKRA2 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57763
GTEX Portal (Tissue expression)ANKRA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9E1
Splice isoforms : SwissVarQ9H9E1
PhosPhoSitePlusQ9H9E1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRA2
DMDM Disease mutations57763
Blocks (Seattle)ANKRA2
PDB (SRS)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
PDB (PDBSum)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
PDB (IMB)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
PDB (RSDB)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
Structural Biology KnowledgeBase3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
SCOP (Structural Classification of Proteins)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
CATH (Classification of proteins structures)3SO8    3V2O    3V2X    3V31    4LG6    4QQI   
SuperfamilyQ9H9E1
Human Protein AtlasENSG00000164331
Peptide AtlasQ9H9E1
HPRD12044
IPIIPI00011902   IPI00964736   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9E1
IntAct (EBI)Q9H9E1
FunCoupENSG00000164331
BioGRIDANKRA2
STRING (EMBL)ANKRA2
ZODIACANKRA2
Ontologies - Pathways
QuickGOQ9H9E1
Ontology : AmiGOtranscription cofactor activity  protein binding  nucleus  cytosol  cytoskeleton  regulation of transcription from RNA polymerase II promoter  biological_process  membrane  ubiquitin protein ligase binding  histone deacetylase binding  histone deacetylase binding  regulation of protein complex assembly  low-density lipoprotein particle receptor binding  3M complex  
Ontology : EGO-EBItranscription cofactor activity  protein binding  nucleus  cytosol  cytoskeleton  regulation of transcription from RNA polymerase II promoter  biological_process  membrane  ubiquitin protein ligase binding  histone deacetylase binding  histone deacetylase binding  regulation of protein complex assembly  low-density lipoprotein particle receptor binding  3M complex  
NDEx NetworkANKRA2
Atlas of Cancer Signalling NetworkANKRA2
Wikipedia pathwaysANKRA2
Orthology - Evolution
OrthoDB57763
GeneTree (enSembl)ENSG00000164331
Phylogenetic Trees/Animal Genes : TreeFamANKRA2
HOVERGENQ9H9E1
HOGENOMQ9H9E1
Homologs : HomoloGeneANKRA2
Homology/Alignments : Family Browser (UCSC)ANKRA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRA2 [hc38]<-fnt>
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRA2
dbVarANKRA2
ClinVarANKRA2
1000_GenomesANKRA2 
Exome Variant ServerANKRA2
ExAC (Exome Aggregation Consortium)ANKRA2 (select the gene name)
Genetic variants : HAPMAP57763
Genomic Variants (DGV)ANKRA2 [DGVbeta]
DECIPHERANKRA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRA2 
Mutations
ICGC Data PortalANKRA2 
TCGA Data PortalANKRA2 
Broad Tumor PortalANKRA2
OASIS PortalANKRA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRA2
DgiDB (Drug Gene Interaction Database)ANKRA2
DoCM (Curated mutations)ANKRA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRA2 (select a term)
intoGenANKRA2
Cancer3DANKRA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605787   
Orphanet
MedgenANKRA2
Genetic Testing Registry ANKRA2
NextProtQ9H9E1 [Medical]
TSGene57763
GENETestsANKRA2
Target ValidationANKRA2
Huge Navigator ANKRA2 [HugePedia]
snp3D : Map Gene to Disease57763
BioCentury BCIQANKRA2
ClinGenANKRA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57763
Chemical/Pharm GKB GenePA24803
Clinical trialANKRA2
Miscellaneous
canSAR (ICR)ANKRA2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRA2
EVEXANKRA2
GoPubMedANKRA2
iHOPANKRA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:18 CEST 2017

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