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ANKRD10 (ankyrin repeat domain 10)

Identity

Alias_symbol (synonym)FLJ20093
Other alias-
HGNC (Hugo) ANKRD10
LocusID (NCBI) 55608
Atlas_Id 47158
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111545039 and ends at 111567454 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD10 (13q34) / ANKRD10 (13q34)ANKRD10 (13q34) / CPNE4 (3q22.1)ANKRD10 (13q34) / MYO16 (13q33.3)
ANKRD10 (13q34) / PAQR4 (16p13.3)ANKRD10 (13q34) / PKMYT1 (16p13.3)NBPF14 (1q21.2) / ANKRD10 (13q34)
ANKRD10 13q34 / MYO16 13q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD10   20265
Cards
Entrez_Gene (NCBI)ANKRD10  55608  ankyrin repeat domain 10
Aliases
GeneCards (Weizmann)ANKRD10
Ensembl hg19 (Hinxton)ENSG00000088448 [Gene_View]  chr13:111545039-111567454 [Contig_View]  ANKRD10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000088448 [Gene_View]  chr13:111545039-111567454 [Contig_View]  ANKRD10 [Vega]
ICGC DataPortalENSG00000088448
TCGA cBioPortalANKRD10
AceView (NCBI)ANKRD10
Genatlas (Paris)ANKRD10
WikiGenes55608
SOURCE (Princeton)ANKRD10
Genetics Home Reference (NIH)ANKRD10
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD10  -     chr13:111545039-111567454 -  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD10  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblANKRD10 - 13q34 [CytoView hg19]  ANKRD10 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIANKRD10 [Mapview hg19]  ANKRD10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000100 AK000111 AK026017 AK094222 AK095763
RefSeq transcript (Entrez)NM_001286721 NM_017664
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)ANKRD10
Cluster EST : UnigeneHs.525163 [ NCBI ]
CGAP (NCI)Hs.525163
Alternative Splicing GalleryENSG00000088448
Gene ExpressionANKRD10 [ NCBI-GEO ]   ANKRD10 [ EBI - ARRAY_EXPRESS ]   ANKRD10 [ SEEK ]   ANKRD10 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55608
GTEX Portal (Tissue expression)ANKRD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXR5
Splice isoforms : SwissVarQ9NXR5
PhosPhoSitePlusQ9NXR5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD10
DMDM Disease mutations55608
Blocks (Seattle)ANKRD10
SuperfamilyQ9NXR5
Human Protein AtlasENSG00000088448
Peptide AtlasQ9NXR5
HPRD12455
IPIIPI00014890   IPI00004437   IPI00640827   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXR5
IntAct (EBI)Q9NXR5
FunCoupENSG00000088448
BioGRIDANKRD10
STRING (EMBL)ANKRD10
ZODIACANKRD10
Ontologies - Pathways
QuickGOQ9NXR5
Ontology : AmiGOprotein binding  regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIprotein binding  regulation of canonical Wnt signaling pathway  
NDEx NetworkANKRD10
Atlas of Cancer Signalling NetworkANKRD10
Wikipedia pathwaysANKRD10
Orthology - Evolution
OrthoDB55608
GeneTree (enSembl)ENSG00000088448
Phylogenetic Trees/Animal Genes : TreeFamANKRD10
HOVERGENQ9NXR5
HOGENOMQ9NXR5
Homologs : HomoloGeneANKRD10
Homology/Alignments : Family Browser (UCSC)ANKRD10
Gene fusions - Rearrangements
Fusion : MitelmanANKRD10/MYO16 [13q34/13q33.3]  
Fusion: TCGAANKRD10 13q34 MYO16 13q33.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD10
dbVarANKRD10
ClinVarANKRD10
1000_GenomesANKRD10 
Exome Variant ServerANKRD10
ExAC (Exome Aggregation Consortium)ANKRD10 (select the gene name)
Genetic variants : HAPMAP55608
Genomic Variants (DGV)ANKRD10 [DGVbeta]
DECIPHER (Syndromes)13:111545039-111567454  ENSG00000088448
CONAN: Copy Number AnalysisANKRD10 
Mutations
ICGC Data PortalANKRD10 
TCGA Data PortalANKRD10 
Broad Tumor PortalANKRD10
OASIS PortalANKRD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD10
DgiDB (Drug Gene Interaction Database)ANKRD10
DoCM (Curated mutations)ANKRD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD10 (select a term)
intoGenANKRD10
Cancer3DANKRD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD10
Genetic Testing Registry ANKRD10
NextProtQ9NXR5 [Medical]
TSGene55608
GENETestsANKRD10
Huge Navigator ANKRD10 [HugePedia]
snp3D : Map Gene to Disease55608
BioCentury BCIQANKRD10
ClinGenANKRD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55608
Chemical/Pharm GKB GenePA134911073
Clinical trialANKRD10
Miscellaneous
canSAR (ICR)ANKRD10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD10
EVEXANKRD10
GoPubMedANKRD10
iHOPANKRD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:49 CET 2017

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