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ANKRD12 (ankyrin repeat domain 12)

Identity

Alias_symbol (synonym)KIAA0874
FLJ20053
GAC-1
Other aliasANCO-2
ANCO1
Nbla00144
HGNC (Hugo) ANKRD12
LocusID (NCBI) 23253
Atlas_Id 55182
Location 18p11.22  [Link to chromosome band 18p11]
Location_base_pair Starts at 9136753 and ends at 9285985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD12 (18p11.22) / ANKRD12 (18p11.22)ANKRD12 (18p11.22) / MTHFD2L (4q13.3)ANKRD12 (18p11.22) / PTPRM (18p11.23)
ANKRD12 (18p11.22) / SMCHD1 (18p11.32)ANP32A (15q23) / ANKRD12 (18p11.22)CLEC12B (12p13.2) / ANKRD12 (18p11.22)
CRIM1 (2p22.3) / ANKRD12 (18p11.22)SREK1 (5q12.3) / ANKRD12 (18p11.22)TRRAP (7q22.1) / ANKRD12 (18p11.22)
ANKRD12 18p11.22 / MTHFD2L 4q13.3ANKRD12 18p11.22 / PTPRM 18p11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD12   29135
Cards
Entrez_Gene (NCBI)ANKRD12  23253  ankyrin repeat domain 12
AliasesANCO-2; ANCO1; GAC-1; Nbla00144
GeneCards (Weizmann)ANKRD12
Ensembl hg19 (Hinxton)ENSG00000101745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101745 [Gene_View]  chr18:9136753-9285985 [Contig_View]  ANKRD12 [Vega]
ICGC DataPortalENSG00000101745
TCGA cBioPortalANKRD12
AceView (NCBI)ANKRD12
Genatlas (Paris)ANKRD12
WikiGenes23253
SOURCE (Princeton)ANKRD12
Genetics Home Reference (NIH)ANKRD12
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD12  -     chr18:9136753-9285985 +  18p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD12  -     18p11.22   [Description]    (hg19-Feb_2009)
EnsemblANKRD12 - 18p11.22 [CytoView hg19]  ANKRD12 - 18p11.22 [CytoView hg38]
Mapping of homologs : NCBIANKRD12 [Mapview hg19]  ANKRD12 [Mapview hg38]
OMIM610616   
Gene and transcription
Genbank (Entrez)AB020681 AB073645 AB075493 AF147338 AF317425
RefSeq transcript (Entrez)NM_001083625 NM_001204056 NM_015208
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD12
Cluster EST : UnigeneHs.464585 [ NCBI ]
CGAP (NCI)Hs.464585
Alternative Splicing GalleryENSG00000101745
Gene ExpressionANKRD12 [ NCBI-GEO ]   ANKRD12 [ EBI - ARRAY_EXPRESS ]   ANKRD12 [ SEEK ]   ANKRD12 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23253
GTEX Portal (Tissue expression)ANKRD12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UB98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UB98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UB98
Splice isoforms : SwissVarQ6UB98
PhosPhoSitePlusQ6UB98
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD12
DMDM Disease mutations23253
Blocks (Seattle)ANKRD12
SuperfamilyQ6UB98
Human Protein AtlasENSG00000101745
Peptide AtlasQ6UB98
HPRD12457
IPIIPI00448465   IPI00448466   IPI01014792   IPI00385713   IPI00654610   IPI01014330   
Protein Interaction databases
DIP (DOE-UCLA)Q6UB98
IntAct (EBI)Q6UB98
FunCoupENSG00000101745
BioGRIDANKRD12
STRING (EMBL)ANKRD12
ZODIACANKRD12
Ontologies - Pathways
QuickGOQ6UB98
Ontology : AmiGOnucleoplasm  cytosol  
Ontology : EGO-EBInucleoplasm  cytosol  
NDEx NetworkANKRD12
Atlas of Cancer Signalling NetworkANKRD12
Wikipedia pathwaysANKRD12
Orthology - Evolution
OrthoDB23253
GeneTree (enSembl)ENSG00000101745
Phylogenetic Trees/Animal Genes : TreeFamANKRD12
HOVERGENQ6UB98
HOGENOMQ6UB98
Homologs : HomoloGeneANKRD12
Homology/Alignments : Family Browser (UCSC)ANKRD12
Gene fusions - Rearrangements
Fusion : MitelmanANKRD12/MTHFD2L [18p11.22/4q13.3]  
Fusion : MitelmanANKRD12/PTPRM [18p11.22/18p11.23]  [t(18;18)(p11;p11)]  
Fusion: TCGAANKRD12 18p11.22 MTHFD2L 4q13.3 BRCA
Fusion: TCGAANKRD12 18p11.22 PTPRM 18p11.23 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD12
dbVarANKRD12
ClinVarANKRD12
1000_GenomesANKRD12 
Exome Variant ServerANKRD12
ExAC (Exome Aggregation Consortium)ANKRD12 (select the gene name)
Genetic variants : HAPMAP23253
Genomic Variants (DGV)ANKRD12 [DGVbeta]
DECIPHERANKRD12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD12 
Mutations
ICGC Data PortalANKRD12 
TCGA Data PortalANKRD12 
Broad Tumor PortalANKRD12
OASIS PortalANKRD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD12
DgiDB (Drug Gene Interaction Database)ANKRD12
DoCM (Curated mutations)ANKRD12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD12 (select a term)
intoGenANKRD12
Cancer3DANKRD12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610616   
Orphanet
MedgenANKRD12
Genetic Testing Registry ANKRD12
NextProtQ6UB98 [Medical]
TSGene23253
GENETestsANKRD12
Target ValidationANKRD12
Huge Navigator ANKRD12 [HugePedia]
snp3D : Map Gene to Disease23253
BioCentury BCIQANKRD12
ClinGenANKRD12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23253
Chemical/Pharm GKB GenePA134899860
Clinical trialANKRD12
Miscellaneous
canSAR (ICR)ANKRD12 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD12
EVEXANKRD12
GoPubMedANKRD12
iHOPANKRD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:44 CEST 2017

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