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ANKRD13A (ankyrin repeat domain 13A)

Identity

Alias_namesANKRD13
ankyrin repeat domain 13
Alias_symbol (synonym)NY-REN-25
Other alias
HGNC (Hugo) ANKRD13A
LocusID (NCBI) 88455
Atlas_Id 60311
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109999430 and ends at 110039430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MMP16 (8q21.3) / ANKRD13A (12q24.11)PRKRIP1 (7q22.1) / ANKRD13A (12q24.11)PTPRN2 (7q36.3) / ANKRD13A (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD13A   21268
Cards
Entrez_Gene (NCBI)ANKRD13A  88455  ankyrin repeat domain 13A
AliasesANKRD13; NY-REN-25
GeneCards (Weizmann)ANKRD13A
Ensembl hg19 (Hinxton)ENSG00000076513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000076513 [Gene_View]  chr12:109999430-110039430 [Contig_View]  ANKRD13A [Vega]
ICGC DataPortalENSG00000076513
TCGA cBioPortalANKRD13A
AceView (NCBI)ANKRD13A
Genatlas (Paris)ANKRD13A
WikiGenes88455
SOURCE (Princeton)ANKRD13A
Genetics Home Reference (NIH)ANKRD13A
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD13A  -     chr12:109999430-110039430 +  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD13A  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblANKRD13A - 12q24.11 [CytoView hg19]  ANKRD13A - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIANKRD13A [Mapview hg19]  ANKRD13A [Mapview hg38]
OMIM615123   
Gene and transcription
Genbank (Entrez)AF064604 AF155103 AK022658 AK025261 AK095130
RefSeq transcript (Entrez)NM_033121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD13A
Cluster EST : UnigeneHs.528703 [ NCBI ]
CGAP (NCI)Hs.528703
Alternative Splicing GalleryENSG00000076513
Gene ExpressionANKRD13A [ NCBI-GEO ]   ANKRD13A [ EBI - ARRAY_EXPRESS ]   ANKRD13A [ SEEK ]   ANKRD13A [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)88455
GTEX Portal (Tissue expression)ANKRD13A
Human Protein AtlasENSG00000076513-ANKRD13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ07
Splice isoforms : SwissVarQ8IZ07
PhosPhoSitePlusQ8IZ07
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    UIM (PS50330)   
Domains : Interpro (EBI)ANKRD13    Ankyrin_rpt    Ankyrin_rpt-contain_dom    UIM_dom   
Domain families : Pfam (Sanger)GPCR_chapero_1 (PF11904)   
Domain families : Pfam (NCBI)pfam11904   
Domain families : Smart (EMBL)ANK (SM00248)  UIM (SM00726)  
Conserved Domain (NCBI)ANKRD13A
DMDM Disease mutations88455
Blocks (Seattle)ANKRD13A
SuperfamilyQ8IZ07
Human Protein Atlas [tissue]ENSG00000076513-ANKRD13A [tissue]
Peptide AtlasQ8IZ07
HPRD12458
IPIIPI00217831   IPI00294987   IPI00903140   IPI01021916   IPI01022377   IPI01022197   IPI01021418   IPI01022751   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ07
IntAct (EBI)Q8IZ07
FunCoupENSG00000076513
BioGRIDANKRD13A
STRING (EMBL)ANKRD13A
ZODIACANKRD13A
Ontologies - Pathways
QuickGOQ8IZ07
Ontology : AmiGOcytoplasm  late endosome  plasma membrane  
Ontology : EGO-EBIcytoplasm  late endosome  plasma membrane  
NDEx NetworkANKRD13A
Atlas of Cancer Signalling NetworkANKRD13A
Wikipedia pathwaysANKRD13A
Orthology - Evolution
OrthoDB88455
GeneTree (enSembl)ENSG00000076513
Phylogenetic Trees/Animal Genes : TreeFamANKRD13A
HOVERGENQ8IZ07
HOGENOMQ8IZ07
Homologs : HomoloGeneANKRD13A
Homology/Alignments : Family Browser (UCSC)ANKRD13A
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD13A
dbVarANKRD13A
ClinVarANKRD13A
1000_GenomesANKRD13A 
Exome Variant ServerANKRD13A
ExAC (Exome Aggregation Consortium)ENSG00000076513
GNOMAD BrowserENSG00000076513
Genetic variants : HAPMAP88455
Genomic Variants (DGV)ANKRD13A [DGVbeta]
DECIPHERANKRD13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD13A 
Mutations
ICGC Data PortalANKRD13A 
TCGA Data PortalANKRD13A 
Broad Tumor PortalANKRD13A
OASIS PortalANKRD13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD13A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD13A
DgiDB (Drug Gene Interaction Database)ANKRD13A
DoCM (Curated mutations)ANKRD13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD13A (select a term)
intoGenANKRD13A
Cancer3DANKRD13A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615123   
Orphanet
DisGeNETANKRD13A
MedgenANKRD13A
Genetic Testing Registry ANKRD13A
NextProtQ8IZ07 [Medical]
TSGene88455
GENETestsANKRD13A
Target ValidationANKRD13A
Huge Navigator ANKRD13A [HugePedia]
snp3D : Map Gene to Disease88455
BioCentury BCIQANKRD13A
ClinGenANKRD13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD88455
Chemical/Pharm GKB GenePA134884324
Clinical trialANKRD13A
Miscellaneous
canSAR (ICR)ANKRD13A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD13A
EVEXANKRD13A
GoPubMedANKRD13A
iHOPANKRD13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:45 CET 2017

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