Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANKRD13B (ankyrin repeat domain 13B)

Identity

Alias_symbol (synonym)FLJ25555
Other alias-
HGNC (Hugo) ANKRD13B
LocusID (NCBI) 124930
Atlas_Id 60312
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 27920527 and ends at 27941779 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NSRP1 (17q11.2) / ANKRD13B (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD13B   26363
Cards
Entrez_Gene (NCBI)ANKRD13B  124930  ankyrin repeat domain 13B
Aliases
GeneCards (Weizmann)ANKRD13B
Ensembl hg19 (Hinxton)ENSG00000198720 [Gene_View]  chr17:27920527-27941779 [Contig_View]  ANKRD13B [Vega]
Ensembl hg38 (Hinxton)ENSG00000198720 [Gene_View]  chr17:27920527-27941779 [Contig_View]  ANKRD13B [Vega]
ICGC DataPortalENSG00000198720
TCGA cBioPortalANKRD13B
AceView (NCBI)ANKRD13B
Genatlas (Paris)ANKRD13B
WikiGenes124930
SOURCE (Princeton)ANKRD13B
Genetics Home Reference (NIH)ANKRD13B
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD13B  -     chr17:27920527-27941779 +  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD13B  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblANKRD13B - 17q11.2 [CytoView hg19]  ANKRD13B - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD13B [Mapview hg19]  ANKRD13B [Mapview hg38]
OMIM615124   
Gene and transcription
Genbank (Entrez)AK000425 AK092673 AK097716 AK098421 BC032554
RefSeq transcript (Entrez)NM_152345
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)ANKRD13B
Cluster EST : UnigeneHs.662164 [ NCBI ]
CGAP (NCI)Hs.662164
Alternative Splicing GalleryENSG00000198720
Gene ExpressionANKRD13B [ NCBI-GEO ]   ANKRD13B [ EBI - ARRAY_EXPRESS ]   ANKRD13B [ SEEK ]   ANKRD13B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124930
GTEX Portal (Tissue expression)ANKRD13B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YJ7
Splice isoforms : SwissVarQ86YJ7
PhosPhoSitePlusQ86YJ7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    UIM (PS50330)   
Domains : Interpro (EBI)ANKRD13    Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ubiquitin-int_motif   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    GPCR_chapero_1 (PF11904)   
Domain families : Pfam (NCBI)pfam12796    pfam11904   
Domain families : Smart (EMBL)ANK (SM00248)  UIM (SM00726)  
Conserved Domain (NCBI)ANKRD13B
DMDM Disease mutations124930
Blocks (Seattle)ANKRD13B
SuperfamilyQ86YJ7
Human Protein AtlasENSG00000198720
Peptide AtlasQ86YJ7
HPRD08694
IPIIPI00167305   IPI00760874   IPI00177644   
Protein Interaction databases
DIP (DOE-UCLA)Q86YJ7
IntAct (EBI)Q86YJ7
FunCoupENSG00000198720
BioGRIDANKRD13B
STRING (EMBL)ANKRD13B
ZODIACANKRD13B
Ontologies - Pathways
QuickGOQ86YJ7
Ontology : AmiGOearly endosome  late endosome  plasma membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIearly endosome  late endosome  plasma membrane  intracellular membrane-bounded organelle  
NDEx NetworkANKRD13B
Atlas of Cancer Signalling NetworkANKRD13B
Wikipedia pathwaysANKRD13B
Orthology - Evolution
OrthoDB124930
GeneTree (enSembl)ENSG00000198720
Phylogenetic Trees/Animal Genes : TreeFamANKRD13B
HOVERGENQ86YJ7
HOGENOMQ86YJ7
Homologs : HomoloGeneANKRD13B
Homology/Alignments : Family Browser (UCSC)ANKRD13B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD13B
dbVarANKRD13B
ClinVarANKRD13B
1000_GenomesANKRD13B 
Exome Variant ServerANKRD13B
ExAC (Exome Aggregation Consortium)ANKRD13B (select the gene name)
Genetic variants : HAPMAP124930
Genomic Variants (DGV)ANKRD13B [DGVbeta]
DECIPHER (Syndromes)17:27920527-27941779  ENSG00000198720
CONAN: Copy Number AnalysisANKRD13B 
Mutations
ICGC Data PortalANKRD13B 
TCGA Data PortalANKRD13B 
Broad Tumor PortalANKRD13B
OASIS PortalANKRD13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD13B
DgiDB (Drug Gene Interaction Database)ANKRD13B
DoCM (Curated mutations)ANKRD13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD13B (select a term)
intoGenANKRD13B
Cancer3DANKRD13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615124   
Orphanet
MedgenANKRD13B
Genetic Testing Registry ANKRD13B
NextProtQ86YJ7 [Medical]
TSGene124930
GENETestsANKRD13B
Huge Navigator ANKRD13B [HugePedia]
snp3D : Map Gene to Disease124930
BioCentury BCIQANKRD13B
ClinGenANKRD13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124930
Chemical/Pharm GKB GenePA142672616
Clinical trialANKRD13B
Miscellaneous
canSAR (ICR)ANKRD13B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD13B
EVEXANKRD13B
GoPubMedANKRD13B
iHOPANKRD13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:54:19 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.