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ANKRD13B (ankyrin repeat domain 13B)

Identity

Alias_symbol (synonym)FLJ25555
Other alias-
HGNC (Hugo) ANKRD13B
LocusID (NCBI) 124930
Atlas_Id 60312
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29593509 and ends at 29614761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NSRP1 (17q11.2) / ANKRD13B (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD13B   26363
Cards
Entrez_Gene (NCBI)ANKRD13B  124930  ankyrin repeat domain 13B
Aliases
GeneCards (Weizmann)ANKRD13B
Ensembl hg19 (Hinxton)ENSG00000198720 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198720 [Gene_View]  chr17:29593509-29614761 [Contig_View]  ANKRD13B [Vega]
ICGC DataPortalENSG00000198720
TCGA cBioPortalANKRD13B
AceView (NCBI)ANKRD13B
Genatlas (Paris)ANKRD13B
WikiGenes124930
SOURCE (Princeton)ANKRD13B
Genetics Home Reference (NIH)ANKRD13B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD13B  -     chr17:29593509-29614761 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD13B  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD13B - 17q11.2 [CytoView hg19]  ANKRD13B - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD13B [Mapview hg19]  ANKRD13B [Mapview hg38]
OMIM615124   
Gene and transcription
Genbank (Entrez)AK000425 AK092673 AK097716 AK098421 BC032554
RefSeq transcript (Entrez)NM_152345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD13B
Cluster EST : UnigeneHs.662164 [ NCBI ]
CGAP (NCI)Hs.662164
Alternative Splicing GalleryENSG00000198720
Gene ExpressionANKRD13B [ NCBI-GEO ]   ANKRD13B [ EBI - ARRAY_EXPRESS ]   ANKRD13B [ SEEK ]   ANKRD13B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124930
GTEX Portal (Tissue expression)ANKRD13B
Human Protein AtlasENSG00000198720-ANKRD13B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YJ7
Splice isoforms : SwissVarQ86YJ7
PhosPhoSitePlusQ86YJ7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    UIM (PS50330)   
Domains : Interpro (EBI)ANKRD13    Ankyrin_rpt    Ankyrin_rpt-contain_dom    UIM_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    GPCR_chapero_1 (PF11904)   
Domain families : Pfam (NCBI)pfam12796    pfam11904   
Domain families : Smart (EMBL)ANK (SM00248)  UIM (SM00726)  
Conserved Domain (NCBI)ANKRD13B
DMDM Disease mutations124930
Blocks (Seattle)ANKRD13B
SuperfamilyQ86YJ7
Human Protein Atlas [tissue]ENSG00000198720-ANKRD13B [tissue]
Peptide AtlasQ86YJ7
HPRD08694
IPIIPI00167305   IPI00760874   IPI00177644   
Protein Interaction databases
DIP (DOE-UCLA)Q86YJ7
IntAct (EBI)Q86YJ7
FunCoupENSG00000198720
BioGRIDANKRD13B
STRING (EMBL)ANKRD13B
ZODIACANKRD13B
Ontologies - Pathways
QuickGOQ86YJ7
Ontology : AmiGOcytoplasm  early endosome  late endosome  plasma membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytoplasm  early endosome  late endosome  plasma membrane  intracellular membrane-bounded organelle  
NDEx NetworkANKRD13B
Atlas of Cancer Signalling NetworkANKRD13B
Wikipedia pathwaysANKRD13B
Orthology - Evolution
OrthoDB124930
GeneTree (enSembl)ENSG00000198720
Phylogenetic Trees/Animal Genes : TreeFamANKRD13B
HOVERGENQ86YJ7
HOGENOMQ86YJ7
Homologs : HomoloGeneANKRD13B
Homology/Alignments : Family Browser (UCSC)ANKRD13B
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD13B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD13B
dbVarANKRD13B
ClinVarANKRD13B
1000_GenomesANKRD13B 
Exome Variant ServerANKRD13B
ExAC (Exome Aggregation Consortium)ENSG00000198720
GNOMAD BrowserENSG00000198720
Genetic variants : HAPMAP124930
Genomic Variants (DGV)ANKRD13B [DGVbeta]
DECIPHERANKRD13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD13B 
Mutations
ICGC Data PortalANKRD13B 
TCGA Data PortalANKRD13B 
Broad Tumor PortalANKRD13B
OASIS PortalANKRD13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD13B
DgiDB (Drug Gene Interaction Database)ANKRD13B
DoCM (Curated mutations)ANKRD13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD13B (select a term)
intoGenANKRD13B
Cancer3DANKRD13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615124   
Orphanet
DisGeNETANKRD13B
MedgenANKRD13B
Genetic Testing Registry ANKRD13B
NextProtQ86YJ7 [Medical]
TSGene124930
GENETestsANKRD13B
Target ValidationANKRD13B
Huge Navigator ANKRD13B [HugePedia]
snp3D : Map Gene to Disease124930
BioCentury BCIQANKRD13B
ClinGenANKRD13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124930
Chemical/Pharm GKB GenePA142672616
Clinical trialANKRD13B
Miscellaneous
canSAR (ICR)ANKRD13B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD13B
EVEXANKRD13B
GoPubMedANKRD13B
iHOPANKRD13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:18:33 CET 2017

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