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ANKRD13C (ankyrin repeat domain 13C)

Identity

Alias (NCBI)dJ677H15.3
HGNC (Hugo) ANKRD13C
HGNC Alias symbDKFZP566D1346
dJ677H15.3
LocusID (NCBI) 81573
Atlas_Id 60313
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 70259002 and ends at 70354734 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD13C (1p31.1) / HHLA3 (1p31.1)ANKRD13C (1p31.1) / OR5V1 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ANKRD13C/HHLA3 (1p31)
t(1;6)(p31;p22) ANKRD13C/OR5V1


External links

Nomenclature
HGNC (Hugo)ANKRD13C   25374
Cards
Entrez_Gene (NCBI)ANKRD13C    ankyrin repeat domain 13C
AliasesdJ677H15.3
GeneCards (Weizmann)ANKRD13C
Ensembl hg19 (Hinxton)ENSG00000118454 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118454 [Gene_View]  ENSG00000118454 [Sequence]  chr1:70259002-70354734 [Contig_View]  ANKRD13C [Vega]
ICGC DataPortalENSG00000118454
TCGA cBioPortalANKRD13C
AceView (NCBI)ANKRD13C
Genatlas (Paris)ANKRD13C
SOURCE (Princeton)ANKRD13C
Genetics Home Reference (NIH)ANKRD13C
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD13C  -     chr1:70259002-70354734 -  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD13C  -     1p31.1   [Description]    (hg19-Feb_2009)
GoldenPathANKRD13C - 1p31.1 [CytoView hg19]  ANKRD13C - 1p31.1 [CytoView hg38]
ImmunoBaseENSG00000118454
genome Data Viewer NCBIANKRD13C [Mapview hg19]  
OMIM615125   
Gene and transcription
Genbank (Entrez)AK074187 AL136717 BC016937 BC028840 BU622247
RefSeq transcript (Entrez)NM_030816
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD13C
Alternative Splicing GalleryENSG00000118454
Gene ExpressionANKRD13C [ NCBI-GEO ]   ANKRD13C [ EBI - ARRAY_EXPRESS ]   ANKRD13C [ SEEK ]   ANKRD13C [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD13C [ Firebrowse - Broad ]
GenevisibleExpression of ANKRD13C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81573
GTEX Portal (Tissue expression)ANKRD13C
Human Protein AtlasENSG00000118454-ANKRD13C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6S4
Splice isoforms : SwissVarQ8N6S4
PhosPhoSitePlusQ8N6S4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)ANKRD13    Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    GPCR_chapero_1 (PF11904)   
Domain families : Pfam (NCBI)pfam12796    pfam11904   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD13C
Blocks (Seattle)ANKRD13C
SuperfamilyQ8N6S4
Human Protein Atlas [tissue]ENSG00000118454-ANKRD13C [tissue]
Peptide AtlasQ8N6S4
HPRD13176
IPIIPI00297480   IPI00006618   IPI00790341   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6S4
IntAct (EBI)Q8N6S4
BioGRIDANKRD13C
STRING (EMBL)ANKRD13C
ZODIACANKRD13C
Ontologies - Pathways
QuickGOQ8N6S4
Ontology : AmiGOsignaling receptor binding  signaling receptor binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  protein retention in ER lumen  protein retention in ER lumen  regulation of receptor biosynthetic process  regulation of receptor biosynthetic process  perinuclear region of cytoplasm  regulation of anoikis  
Ontology : EGO-EBIsignaling receptor binding  signaling receptor binding  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  protein retention in ER lumen  protein retention in ER lumen  regulation of receptor biosynthetic process  regulation of receptor biosynthetic process  perinuclear region of cytoplasm  regulation of anoikis  
NDEx NetworkANKRD13C
Atlas of Cancer Signalling NetworkANKRD13C
Wikipedia pathwaysANKRD13C
Orthology - Evolution
OrthoDB81573
GeneTree (enSembl)ENSG00000118454
Phylogenetic Trees/Animal Genes : TreeFamANKRD13C
HOGENOMQ8N6S4
Homologs : HomoloGeneANKRD13C
Homology/Alignments : Family Browser (UCSC)ANKRD13C
Gene fusions - Rearrangements
Fusion : QuiverANKRD13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD13C [hg38]
dbVarANKRD13C
ClinVarANKRD13C
MonarchANKRD13C
1000_GenomesANKRD13C 
Exome Variant ServerANKRD13C
GNOMAD BrowserENSG00000118454
Varsome BrowserANKRD13C
Genomic Variants (DGV)ANKRD13C [DGVbeta]
DECIPHERANKRD13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD13C 
Mutations
ICGC Data PortalANKRD13C 
TCGA Data PortalANKRD13C 
Broad Tumor PortalANKRD13C
OASIS PortalANKRD13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD13C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DANKRD13C
Mutations and Diseases : HGMDANKRD13C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD13C
DgiDB (Drug Gene Interaction Database)ANKRD13C
DoCM (Curated mutations)ANKRD13C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD13C (select a term)
intoGenANKRD13C
Cancer3DANKRD13C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615125   
Orphanet
DisGeNETANKRD13C
MedgenANKRD13C
Genetic Testing Registry ANKRD13C
NextProtQ8N6S4 [Medical]
GENETestsANKRD13C
Target ValidationANKRD13C
Huge Navigator ANKRD13C [HugePedia]
ClinGenANKRD13C
Clinical trials, drugs, therapy
MyCancerGenomeANKRD13C
Protein Interactions : CTD
Pharm GKB GenePA142672617
Clinical trialANKRD13C
Miscellaneous
canSAR (ICR)ANKRD13C (select the gene name)
HarmonizomeANKRD13C
DataMed IndexANKRD13C
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD13C
EVEXANKRD13C
GoPubMedANKRD13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:45:42 CET 2020

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