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ANKRD13D (ankyrin repeat domain 13 family, member D)

Identity

Alias_namesankyrin repeat domain 13 family, member D
Other alias-
HGNC (Hugo) ANKRD13D
LocusID (NCBI) 338692
Atlas_Id 60314
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67056762 and ends at 67069955 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD13D (11q13.2) / ANKRD13D (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD13D   27880
Cards
Entrez_Gene (NCBI)ANKRD13D  338692  ankyrin repeat domain 13 family, member D
Aliases
GeneCards (Weizmann)ANKRD13D
Ensembl hg19 (Hinxton)ENSG00000172932 [Gene_View]  chr11:67056762-67069955 [Contig_View]  ANKRD13D [Vega]
Ensembl hg38 (Hinxton)ENSG00000172932 [Gene_View]  chr11:67056762-67069955 [Contig_View]  ANKRD13D [Vega]
ICGC DataPortalENSG00000172932
TCGA cBioPortalANKRD13D
AceView (NCBI)ANKRD13D
Genatlas (Paris)ANKRD13D
WikiGenes338692
SOURCE (Princeton)ANKRD13D
Genetics Home Reference (NIH)ANKRD13D
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD13D  -     chr11:67056762-67069955 +  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD13D  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblANKRD13D - 11q13.2 [CytoView hg19]  ANKRD13D - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD13D [Mapview hg19]  ANKRD13D [Mapview hg38]
OMIM615126   
Gene and transcription
Genbank (Entrez)AK027313 AK057566 AK057681 AK091614 AK096277
RefSeq transcript (Entrez)NM_207354
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)ANKRD13D
Cluster EST : UnigeneHs.438673 [ NCBI ]
CGAP (NCI)Hs.438673
Alternative Splicing GalleryENSG00000172932
Gene ExpressionANKRD13D [ NCBI-GEO ]   ANKRD13D [ EBI - ARRAY_EXPRESS ]   ANKRD13D [ SEEK ]   ANKRD13D [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD13D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338692
GTEX Portal (Tissue expression)ANKRD13D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTN6
Splice isoforms : SwissVarQ6ZTN6
PhosPhoSitePlusQ6ZTN6
Domaine pattern : Prosite (Expaxy)UIM (PS50330)   
Domains : Interpro (EBI)ANKRD13    Ubiquitin-int_motif   
Domain families : Pfam (Sanger)GPCR_chapero_1 (PF11904)   
Domain families : Pfam (NCBI)pfam11904   
Domain families : Smart (EMBL)UIM (SM00726)  
Conserved Domain (NCBI)ANKRD13D
DMDM Disease mutations338692
Blocks (Seattle)ANKRD13D
SuperfamilyQ6ZTN6
Human Protein AtlasENSG00000172932
Peptide AtlasQ6ZTN6
HPRD17349
IPIIPI00941092   IPI00784159   IPI00921395   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTN6
IntAct (EBI)Q6ZTN6
FunCoupENSG00000172932
BioGRIDANKRD13D
STRING (EMBL)ANKRD13D
ZODIACANKRD13D
Ontologies - Pathways
QuickGOQ6ZTN6
Ontology : AmiGOlate endosome  plasma membrane  
Ontology : EGO-EBIlate endosome  plasma membrane  
NDEx NetworkANKRD13D
Atlas of Cancer Signalling NetworkANKRD13D
Wikipedia pathwaysANKRD13D
Orthology - Evolution
OrthoDB338692
GeneTree (enSembl)ENSG00000172932
Phylogenetic Trees/Animal Genes : TreeFamANKRD13D
HOVERGENQ6ZTN6
HOGENOMQ6ZTN6
Homologs : HomoloGeneANKRD13D
Homology/Alignments : Family Browser (UCSC)ANKRD13D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD13D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD13D
dbVarANKRD13D
ClinVarANKRD13D
1000_GenomesANKRD13D 
Exome Variant ServerANKRD13D
ExAC (Exome Aggregation Consortium)ANKRD13D (select the gene name)
Genetic variants : HAPMAP338692
Genomic Variants (DGV)ANKRD13D [DGVbeta]
DECIPHER (Syndromes)11:67056762-67069955  ENSG00000172932
CONAN: Copy Number AnalysisANKRD13D 
Mutations
ICGC Data PortalANKRD13D 
TCGA Data PortalANKRD13D 
Broad Tumor PortalANKRD13D
OASIS PortalANKRD13D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD13D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD13D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD13D
DgiDB (Drug Gene Interaction Database)ANKRD13D
DoCM (Curated mutations)ANKRD13D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD13D (select a term)
intoGenANKRD13D
Cancer3DANKRD13D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615126   
Orphanet
MedgenANKRD13D
Genetic Testing Registry ANKRD13D
NextProtQ6ZTN6 [Medical]
TSGene338692
GENETestsANKRD13D
Huge Navigator ANKRD13D [HugePedia]
snp3D : Map Gene to Disease338692
BioCentury BCIQANKRD13D
ClinGenANKRD13D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338692
Chemical/Pharm GKB GenePA142672618
Clinical trialANKRD13D
Miscellaneous
canSAR (ICR)ANKRD13D (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD13D
EVEXANKRD13D
GoPubMedANKRD13D
iHOPANKRD13D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:19 CET 2017

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