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ANKRD16 (ankyrin repeat domain 16)

Identity

Alias_symbol (synonym)DKFZP434N1511
Other alias-
HGNC (Hugo) ANKRD16
LocusID (NCBI) 54522
Atlas_Id 60315
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5878087 and ends at 5889897 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UGGT2 (13q32.1) / ANKRD16 (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD16   23471
Cards
Entrez_Gene (NCBI)ANKRD16  54522  ankyrin repeat domain 16
Aliases
GeneCards (Weizmann)ANKRD16
Ensembl hg19 (Hinxton)ENSG00000134461 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134461 [Gene_View]  chr10:5878087-5889897 [Contig_View]  ANKRD16 [Vega]
ICGC DataPortalENSG00000134461
TCGA cBioPortalANKRD16
AceView (NCBI)ANKRD16
Genatlas (Paris)ANKRD16
WikiGenes54522
SOURCE (Princeton)ANKRD16
Genetics Home Reference (NIH)ANKRD16
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD16  -     chr10:5878087-5889897 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD16  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD16 - 10p15.1 [CytoView hg19]  ANKRD16 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD16 [Mapview hg19]  ANKRD16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA431197 AI738771 AK093489 AK094497 AK129672
RefSeq transcript (Entrez)NM_001009941 NM_001009942 NM_001009943 NM_019046
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD16
Cluster EST : UnigeneHs.289828 [ NCBI ]
CGAP (NCI)Hs.289828
Alternative Splicing GalleryENSG00000134461
Gene ExpressionANKRD16 [ NCBI-GEO ]   ANKRD16 [ EBI - ARRAY_EXPRESS ]   ANKRD16 [ SEEK ]   ANKRD16 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54522
GTEX Portal (Tissue expression)ANKRD16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P6B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P6B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P6B7
Splice isoforms : SwissVarQ6P6B7
PhosPhoSitePlusQ6P6B7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD16
DMDM Disease mutations54522
Blocks (Seattle)ANKRD16
SuperfamilyQ6P6B7
Human Protein AtlasENSG00000134461
Peptide AtlasQ6P6B7
HPRD12459
IPIIPI00418468   IPI00553055   IPI00981535   IPI00552205   IPI00945825   
Protein Interaction databases
DIP (DOE-UCLA)Q6P6B7
IntAct (EBI)Q6P6B7
FunCoupENSG00000134461
BioGRIDANKRD16
STRING (EMBL)ANKRD16
ZODIACANKRD16
Ontologies - Pathways
QuickGOQ6P6B7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD16
Atlas of Cancer Signalling NetworkANKRD16
Wikipedia pathwaysANKRD16
Orthology - Evolution
OrthoDB54522
GeneTree (enSembl)ENSG00000134461
Phylogenetic Trees/Animal Genes : TreeFamANKRD16
HOVERGENQ6P6B7
HOGENOMQ6P6B7
Homologs : HomoloGeneANKRD16
Homology/Alignments : Family Browser (UCSC)ANKRD16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD16
dbVarANKRD16
ClinVarANKRD16
1000_GenomesANKRD16 
Exome Variant ServerANKRD16
ExAC (Exome Aggregation Consortium)ANKRD16 (select the gene name)
Genetic variants : HAPMAP54522
Genomic Variants (DGV)ANKRD16 [DGVbeta]
DECIPHERANKRD16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD16 
Mutations
ICGC Data PortalANKRD16 
TCGA Data PortalANKRD16 
Broad Tumor PortalANKRD16
OASIS PortalANKRD16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD16
DgiDB (Drug Gene Interaction Database)ANKRD16
DoCM (Curated mutations)ANKRD16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD16 (select a term)
intoGenANKRD16
Cancer3DANKRD16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD16
Genetic Testing Registry ANKRD16
NextProtQ6P6B7 [Medical]
TSGene54522
GENETestsANKRD16
Target ValidationANKRD16
Huge Navigator ANKRD16 [HugePedia]
snp3D : Map Gene to Disease54522
BioCentury BCIQANKRD16
ClinGenANKRD16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54522
Chemical/Pharm GKB GenePA134916467
Clinical trialANKRD16
Miscellaneous
canSAR (ICR)ANKRD16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD16
EVEXANKRD16
GoPubMedANKRD16
iHOPANKRD16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:07 CEST 2017

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