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ANKRD18A (ankyrin repeat domain 18A)

Identity

Alias_symbol (synonym)KIAA2015
FLJ35740
Other alias-
HGNC (Hugo) ANKRD18A
LocusID (NCBI) 253650
Atlas_Id 53288
Location 9p13.1  [Link to chromosome band 9p13]
Location_base_pair Starts at 38571364 and ends at 38620660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD18A   23643
Cards
Entrez_Gene (NCBI)ANKRD18A  253650  ankyrin repeat domain 18A
Aliases
GeneCards (Weizmann)ANKRD18A
Ensembl hg19 (Hinxton)ENSG00000180071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180071 [Gene_View]  chr9:38571364-38620660 [Contig_View]  ANKRD18A [Vega]
ICGC DataPortalENSG00000180071
TCGA cBioPortalANKRD18A
AceView (NCBI)ANKRD18A
Genatlas (Paris)ANKRD18A
WikiGenes253650
SOURCE (Princeton)ANKRD18A
Genetics Home Reference (NIH)ANKRD18A
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD18A  -     chr9:38571364-38620660 -  9p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD18A  -     9p13.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD18A - 9p13.1 [CytoView hg19]  ANKRD18A - 9p13.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD18A [Mapview hg19]  ANKRD18A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB095935 AK058117 AK093059 AY550933 BC024252
RefSeq transcript (Entrez)NM_001331100 NM_147195
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD18A
Cluster EST : UnigeneHs.724217 [ NCBI ]
CGAP (NCI)Hs.724217
Alternative Splicing GalleryENSG00000180071
Gene ExpressionANKRD18A [ NCBI-GEO ]   ANKRD18A [ EBI - ARRAY_EXPRESS ]   ANKRD18A [ SEEK ]   ANKRD18A [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD18A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253650
GTEX Portal (Tissue expression)ANKRD18A
Human Protein AtlasENSG00000180071-ANKRD18A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVF6
Splice isoforms : SwissVarQ8IVF6
PhosPhoSitePlusQ8IVF6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DUF3496   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    DUF3496 (PF12001)   
Domain families : Pfam (NCBI)pfam12796    pfam12001   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD18A
DMDM Disease mutations253650
Blocks (Seattle)ANKRD18A
SuperfamilyQ8IVF6
Human Protein Atlas [tissue]ENSG00000180071-ANKRD18A [tissue]
Peptide AtlasQ8IVF6
HPRD13419
IPIIPI00217005   IPI00396187   IPI00844039   IPI00983185   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVF6
IntAct (EBI)Q8IVF6
FunCoupENSG00000180071
BioGRIDANKRD18A
STRING (EMBL)ANKRD18A
ZODIACANKRD18A
Ontologies - Pathways
QuickGOQ8IVF6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD18A
Atlas of Cancer Signalling NetworkANKRD18A
Wikipedia pathwaysANKRD18A
Orthology - Evolution
OrthoDB253650
GeneTree (enSembl)ENSG00000180071
Phylogenetic Trees/Animal Genes : TreeFamANKRD18A
HOVERGENQ8IVF6
HOGENOMQ8IVF6
Homologs : HomoloGeneANKRD18A
Homology/Alignments : Family Browser (UCSC)ANKRD18A
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD18A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD18A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD18A
dbVarANKRD18A
ClinVarANKRD18A
1000_GenomesANKRD18A 
Exome Variant ServerANKRD18A
ExAC (Exome Aggregation Consortium)ENSG00000180071
GNOMAD BrowserENSG00000180071
Genetic variants : HAPMAP253650
Genomic Variants (DGV)ANKRD18A [DGVbeta]
DECIPHERANKRD18A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD18A 
Mutations
ICGC Data PortalANKRD18A 
TCGA Data PortalANKRD18A 
Broad Tumor PortalANKRD18A
OASIS PortalANKRD18A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD18A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD18A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD18A
DgiDB (Drug Gene Interaction Database)ANKRD18A
DoCM (Curated mutations)ANKRD18A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD18A (select a term)
intoGenANKRD18A
Cancer3DANKRD18A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD18A
MedgenANKRD18A
Genetic Testing Registry ANKRD18A
NextProtQ8IVF6 [Medical]
TSGene253650
GENETestsANKRD18A
Target ValidationANKRD18A
Huge Navigator ANKRD18A [HugePedia]
snp3D : Map Gene to Disease253650
BioCentury BCIQANKRD18A
ClinGenANKRD18A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253650
Chemical/Pharm GKB GenePA134889624
Clinical trialANKRD18A
Miscellaneous
canSAR (ICR)ANKRD18A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD18A
EVEXANKRD18A
GoPubMedANKRD18A
iHOPANKRD18A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:03:02 CET 2017

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