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ANKRD18B (ankyrin repeat domain 18B)

Identity

Alias_symbol (synonym)bA255A11.3
Other aliasbA255A11.5
HGNC (Hugo) ANKRD18B
LocusID (NCBI) 441459
Atlas_Id 55286
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33524413 and ends at 33573003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD18B (9p13.3) / SNX30 (9q32)SIN3A (15q24.2) / ANKRD18B (9p13.3)ANKRD18B 9p13.3 / SNX30 9q32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD18B   23644
Cards
Entrez_Gene (NCBI)ANKRD18B  441459  ankyrin repeat domain 18B
AliasesbA255A11.3; bA255A11.5
GeneCards (Weizmann)ANKRD18B
Ensembl hg19 (Hinxton)ENSG00000230453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230453 [Gene_View]  chr9:33524413-33573003 [Contig_View]  ANKRD18B [Vega]
ICGC DataPortalENSG00000230453
TCGA cBioPortalANKRD18B
AceView (NCBI)ANKRD18B
Genatlas (Paris)ANKRD18B
WikiGenes441459
SOURCE (Princeton)ANKRD18B
Genetics Home Reference (NIH)ANKRD18B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD18B  -     chr9:33524413-33573003 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD18B  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblANKRD18B - 9p13.3 [CytoView hg19]  ANKRD18B - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIANKRD18B [Mapview hg19]  ANKRD18B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009440 BF103989 DB512460 DW421358 DW441346
RefSeq transcript (Entrez)NM_001013728 NM_001244752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD18B
Cluster EST : UnigeneHs.493710 [ NCBI ]
CGAP (NCI)Hs.493710
Alternative Splicing GalleryENSG00000230453
Gene ExpressionANKRD18B [ NCBI-GEO ]   ANKRD18B [ EBI - ARRAY_EXPRESS ]   ANKRD18B [ SEEK ]   ANKRD18B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD18B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441459
GTEX Portal (Tissue expression)ANKRD18B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A2Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A2Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A2Z9
Splice isoforms : SwissVarA2A2Z9
PhosPhoSitePlusA2A2Z9
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DUF3496   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    DUF3496 (PF12001)   
Domain families : Pfam (NCBI)pfam12796    pfam12001   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD18B
DMDM Disease mutations441459
Blocks (Seattle)ANKRD18B
SuperfamilyA2A2Z9
Human Protein AtlasENSG00000230453
Peptide AtlasA2A2Z9
HPRD18466
IPIIPI00852758   IPI00930517   
Protein Interaction databases
DIP (DOE-UCLA)A2A2Z9
IntAct (EBI)A2A2Z9
FunCoupENSG00000230453
BioGRIDANKRD18B
STRING (EMBL)ANKRD18B
ZODIACANKRD18B
Ontologies - Pathways
QuickGOA2A2Z9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD18B
Atlas of Cancer Signalling NetworkANKRD18B
Wikipedia pathwaysANKRD18B
Orthology - Evolution
OrthoDB441459
GeneTree (enSembl)ENSG00000230453
Phylogenetic Trees/Animal Genes : TreeFamANKRD18B
HOVERGENA2A2Z9
HOGENOMA2A2Z9
Homologs : HomoloGeneANKRD18B
Homology/Alignments : Family Browser (UCSC)ANKRD18B
Gene fusions - Rearrangements
Fusion : MitelmanANKRD18B/SNX30 [9p13.3/9q32]  
Fusion: TCGAANKRD18B 9p13.3 SNX30 9q32 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD18B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD18B
dbVarANKRD18B
ClinVarANKRD18B
1000_GenomesANKRD18B 
Exome Variant ServerANKRD18B
ExAC (Exome Aggregation Consortium)ANKRD18B (select the gene name)
Genetic variants : HAPMAP441459
Genomic Variants (DGV)ANKRD18B [DGVbeta]
DECIPHERANKRD18B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD18B 
Mutations
ICGC Data PortalANKRD18B 
TCGA Data PortalANKRD18B 
Broad Tumor PortalANKRD18B
OASIS PortalANKRD18B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD18B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD18B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD18B
DgiDB (Drug Gene Interaction Database)ANKRD18B
DoCM (Curated mutations)ANKRD18B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD18B (select a term)
intoGenANKRD18B
Cancer3DANKRD18B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD18B
Genetic Testing Registry ANKRD18B
NextProtA2A2Z9 [Medical]
TSGene441459
GENETestsANKRD18B
Target ValidationANKRD18B
Huge Navigator ANKRD18B [HugePedia]
snp3D : Map Gene to Disease441459
BioCentury BCIQANKRD18B
ClinGenANKRD18B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441459
Chemical/Pharm GKB GenePA134961354
Clinical trialANKRD18B
Miscellaneous
canSAR (ICR)ANKRD18B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD18B
EVEXANKRD18B
GoPubMedANKRD18B
iHOPANKRD18B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:54:59 CEST 2017

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