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ANKRD19P (ankyrin repeat domain 19, pseudogene)

Identity

Alias_namesANKRD19
ankyrin repeat domain 19
ankyrin repeat domain 19 pseudogene
Alias_symbol (synonym)FLJ36178
Other aliasbA526D8.2
HGNC (Hugo) ANKRD19P
LocusID (NCBI) 138649
Atlas_Id 60319
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92813907 and ends at 92838457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPP1R35 (7q22.1) / ANKRD19P (9q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD19P   22567
Cards
Entrez_Gene (NCBI)ANKRD19P  138649  ankyrin repeat domain 19, pseudogene
AliasesANKRD19; bA526D8.2
GeneCards (Weizmann)ANKRD19P
Ensembl hg19 (Hinxton)ENSG00000187984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187984 [Gene_View]  chr9:92813907-92838457 [Contig_View]  ANKRD19P [Vega]
ICGC DataPortalENSG00000187984
TCGA cBioPortalANKRD19P
AceView (NCBI)ANKRD19P
Genatlas (Paris)ANKRD19P
WikiGenes138649
SOURCE (Princeton)ANKRD19P
Genetics Home Reference (NIH)ANKRD19P
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD19P  -     chr9:92813907-92838457 +  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD19P  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblANKRD19P - 9q22.31 [CytoView hg19]  ANKRD19P - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIANKRD19P [Mapview hg19]  ANKRD19P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093497 AK292218 BC028712 BC038951 BC117367
RefSeq transcript (Entrez)NM_001010925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD19P
Cluster EST : UnigeneHs.643597 [ NCBI ]
CGAP (NCI)Hs.643597
Alternative Splicing GalleryENSG00000187984
Gene ExpressionANKRD19P [ NCBI-GEO ]   ANKRD19P [ EBI - ARRAY_EXPRESS ]   ANKRD19P [ SEEK ]   ANKRD19P [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD19P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138649
GTEX Portal (Tissue expression)ANKRD19P
Human Protein AtlasENSG00000187984-ANKRD19P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H560   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H560  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H560
Splice isoforms : SwissVarQ9H560
PhosPhoSitePlusQ9H560
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD19P
DMDM Disease mutations138649
Blocks (Seattle)ANKRD19P
SuperfamilyQ9H560
Human Protein Atlas [tissue]ENSG00000187984-ANKRD19P [tissue]
Peptide AtlasQ9H560
HPRD16490
IPIIPI00003221   
Protein Interaction databases
DIP (DOE-UCLA)Q9H560
IntAct (EBI)Q9H560
FunCoupENSG00000187984
BioGRIDANKRD19P
STRING (EMBL)ANKRD19P
ZODIACANKRD19P
Ontologies - Pathways
QuickGOQ9H560
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD19P
Atlas of Cancer Signalling NetworkANKRD19P
Wikipedia pathwaysANKRD19P
Orthology - Evolution
OrthoDB138649
GeneTree (enSembl)ENSG00000187984
Phylogenetic Trees/Animal Genes : TreeFamANKRD19P
HOVERGENQ9H560
HOGENOMQ9H560
Homologs : HomoloGeneANKRD19P
Homology/Alignments : Family Browser (UCSC)ANKRD19P
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD19P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD19P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD19P
dbVarANKRD19P
ClinVarANKRD19P
1000_GenomesANKRD19P 
Exome Variant ServerANKRD19P
ExAC (Exome Aggregation Consortium)ENSG00000187984
GNOMAD BrowserENSG00000187984
Genetic variants : HAPMAP138649
Genomic Variants (DGV)ANKRD19P [DGVbeta]
DECIPHERANKRD19P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD19P 
Mutations
ICGC Data PortalANKRD19P 
TCGA Data PortalANKRD19P 
Broad Tumor PortalANKRD19P
OASIS PortalANKRD19P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD19P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD19P
DgiDB (Drug Gene Interaction Database)ANKRD19P
DoCM (Curated mutations)ANKRD19P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD19P (select a term)
intoGenANKRD19P
Cancer3DANKRD19P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD19P
MedgenANKRD19P
Genetic Testing Registry ANKRD19P
NextProtQ9H560 [Medical]
TSGene138649
GENETestsANKRD19P
Target ValidationANKRD19P
Huge Navigator ANKRD19P [HugePedia]
snp3D : Map Gene to Disease138649
BioCentury BCIQANKRD19P
ClinGenANKRD19P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138649
Chemical/Pharm GKB GenePA134991046
Clinical trialANKRD19P
Miscellaneous
canSAR (ICR)ANKRD19P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD19P
EVEXANKRD19P
GoPubMedANKRD19P
iHOPANKRD19P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:18 CET 2017

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