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ANKRD20A1 (ankyrin repeat domain 20 family member A1)

Identity

Alias_namesANKRD20A
ankyrin repeat domain 20A
ankyrin repeat domain 20 family, member A1
Alias_symbol (synonym)DKFZp434A171
Other alias
HGNC (Hugo) ANKRD20A1
LocusID (NCBI) 84210
Atlas_Id 60320
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 66109847 and ends at 66152966 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A1   23665
Cards
Entrez_Gene (NCBI)ANKRD20A1  84210  ankyrin repeat domain 20 family member A1
AliasesANKRD20A
GeneCards (Weizmann)ANKRD20A1
Ensembl hg19 (Hinxton)ENSG00000260691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260691 [Gene_View]  chr9:66109847-66152966 [Contig_View]  ANKRD20A1 [Vega]
ICGC DataPortalENSG00000260691
TCGA cBioPortalANKRD20A1
AceView (NCBI)ANKRD20A1
Genatlas (Paris)ANKRD20A1
WikiGenes84210
SOURCE (Princeton)ANKRD20A1
Genetics Home Reference (NIH)ANKRD20A1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD20A1  -     chr9:66109847-66152966 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD20A1  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblANKRD20A1 - 9q21.11 [CytoView hg19]  ANKRD20A1 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A1 [Mapview hg19]  ANKRD20A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL136793 AM393131 BC146681
RefSeq transcript (Entrez)NM_032250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD20A1
Cluster EST : UnigeneHs.632671 [ NCBI ]
CGAP (NCI)Hs.632671
Alternative Splicing GalleryENSG00000260691
Gene ExpressionANKRD20A1 [ NCBI-GEO ]   ANKRD20A1 [ EBI - ARRAY_EXPRESS ]   ANKRD20A1 [ SEEK ]   ANKRD20A1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84210
GTEX Portal (Tissue expression)ANKRD20A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TYW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TYW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TYW2
Splice isoforms : SwissVarQ5TYW2
PhosPhoSitePlusQ5TYW2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A1
DMDM Disease mutations84210
Blocks (Seattle)ANKRD20A1
SuperfamilyQ5TYW2
Human Protein AtlasENSG00000260691
Peptide AtlasQ5TYW2
HPRD10649
IPIIPI00020265   
Protein Interaction databases
DIP (DOE-UCLA)Q5TYW2
IntAct (EBI)Q5TYW2
FunCoupENSG00000260691
BioGRIDANKRD20A1
STRING (EMBL)ANKRD20A1
ZODIACANKRD20A1
Ontologies - Pathways
QuickGOQ5TYW2
Ontology : AmiGOplasma membrane  
Ontology : EGO-EBIplasma membrane  
NDEx NetworkANKRD20A1
Atlas of Cancer Signalling NetworkANKRD20A1
Wikipedia pathwaysANKRD20A1
Orthology - Evolution
OrthoDB84210
GeneTree (enSembl)ENSG00000260691
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A1
HOVERGENQ5TYW2
HOGENOMQ5TYW2
Homologs : HomoloGeneANKRD20A1
Homology/Alignments : Family Browser (UCSC)ANKRD20A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A1
dbVarANKRD20A1
ClinVarANKRD20A1
1000_GenomesANKRD20A1 
Exome Variant ServerANKRD20A1
ExAC (Exome Aggregation Consortium)ANKRD20A1 (select the gene name)
Genetic variants : HAPMAP84210
Genomic Variants (DGV)ANKRD20A1 [DGVbeta]
DECIPHERANKRD20A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD20A1 
Mutations
ICGC Data PortalANKRD20A1 
TCGA Data PortalANKRD20A1 
Broad Tumor PortalANKRD20A1
OASIS PortalANKRD20A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD20A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A1
DgiDB (Drug Gene Interaction Database)ANKRD20A1
DoCM (Curated mutations)ANKRD20A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A1 (select a term)
intoGenANKRD20A1
Cancer3DANKRD20A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A1
Genetic Testing Registry ANKRD20A1
NextProtQ5TYW2 [Medical]
TSGene84210
GENETestsANKRD20A1
Target ValidationANKRD20A1
Huge Navigator ANKRD20A1 [HugePedia]
snp3D : Map Gene to Disease84210
BioCentury BCIQANKRD20A1
ClinGenANKRD20A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84210
Chemical/Pharm GKB GenePA134953648
Clinical trialANKRD20A1
Miscellaneous
canSAR (ICR)ANKRD20A1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A1
EVEXANKRD20A1
GoPubMedANKRD20A1
iHOPANKRD20A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:08 CEST 2017

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