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ANKRD20A2 (ankyrin repeat domain 20 family member A2)

Identity

Alias_namesankyrin repeat domain 20 family, member A2
Other alias-
HGNC (Hugo) ANKRD20A2
LocusID (NCBI) 441430
Atlas_Id 60324
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 40223285 and ends at 40266392 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A2   31979
Cards
Entrez_Gene (NCBI)ANKRD20A2  441430  ankyrin repeat domain 20 family member A2
Aliases
GeneCards (Weizmann)ANKRD20A2
Ensembl hg19 (Hinxton)ENSG00000183148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183148 [Gene_View]  chr9:40223285-40266392 [Contig_View]  ANKRD20A2 [Vega]
ICGC DataPortalENSG00000183148
TCGA cBioPortalANKRD20A2
AceView (NCBI)ANKRD20A2
Genatlas (Paris)ANKRD20A2
WikiGenes441430
SOURCE (Princeton)ANKRD20A2
Genetics Home Reference (NIH)ANKRD20A2
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD20A2  -     chr9:40223285-40266392 +  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD20A2  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD20A2 - 9p11.2 [CytoView hg19]  ANKRD20A2 - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A2 [Mapview hg19]  ANKRD20A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001012421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD20A2
Cluster EST : UnigeneHs.632663 [ NCBI ]
CGAP (NCI)Hs.632663
Alternative Splicing GalleryENSG00000183148
Gene ExpressionANKRD20A2 [ NCBI-GEO ]   ANKRD20A2 [ EBI - ARRAY_EXPRESS ]   ANKRD20A2 [ SEEK ]   ANKRD20A2 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441430
GTEX Portal (Tissue expression)ANKRD20A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQ80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQ80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQ80
Splice isoforms : SwissVarQ5SQ80
PhosPhoSitePlusQ5SQ80
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A2
DMDM Disease mutations441430
Blocks (Seattle)ANKRD20A2
SuperfamilyQ5SQ80
Human Protein AtlasENSG00000183148
Peptide AtlasQ5SQ80
HPRD18652
IPIIPI00644106   IPI00930540   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQ80
IntAct (EBI)Q5SQ80
FunCoupENSG00000183148
BioGRIDANKRD20A2
STRING (EMBL)ANKRD20A2
ZODIACANKRD20A2
Ontologies - Pathways
QuickGOQ5SQ80
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A2
Atlas of Cancer Signalling NetworkANKRD20A2
Wikipedia pathwaysANKRD20A2
Orthology - Evolution
OrthoDB441430
GeneTree (enSembl)ENSG00000183148
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A2
HOVERGENQ5SQ80
HOGENOMQ5SQ80
Homologs : HomoloGeneANKRD20A2
Homology/Alignments : Family Browser (UCSC)ANKRD20A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A2
dbVarANKRD20A2
ClinVarANKRD20A2
1000_GenomesANKRD20A2 
Exome Variant ServerANKRD20A2
ExAC (Exome Aggregation Consortium)ANKRD20A2 (select the gene name)
Genetic variants : HAPMAP441430
Genomic Variants (DGV)ANKRD20A2 [DGVbeta]
DECIPHERANKRD20A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD20A2 
Mutations
ICGC Data PortalANKRD20A2 
TCGA Data PortalANKRD20A2 
Broad Tumor PortalANKRD20A2
OASIS PortalANKRD20A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD20A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD20A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A2
DgiDB (Drug Gene Interaction Database)ANKRD20A2
DoCM (Curated mutations)ANKRD20A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A2 (select a term)
intoGenANKRD20A2
Cancer3DANKRD20A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A2
Genetic Testing Registry ANKRD20A2
NextProtQ5SQ80 [Medical]
TSGene441430
GENETestsANKRD20A2
Target ValidationANKRD20A2
Huge Navigator ANKRD20A2 [HugePedia]
snp3D : Map Gene to Disease441430
BioCentury BCIQANKRD20A2
ClinGenANKRD20A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441430
Chemical/Pharm GKB GenePA142672619
Clinical trialANKRD20A2
Miscellaneous
canSAR (ICR)ANKRD20A2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A2
EVEXANKRD20A2
GoPubMedANKRD20A2
iHOPANKRD20A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:09 CEST 2017

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