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ANKRD20A2P (ankyrin repeat domain 20 family member A2, pseudogene)

Identity

Alias (NCBI)ANKRD20A2
HGNC (Hugo) ANKRD20A2P
HGNC Previous nameankyrin repeat domain 20 family, member A2
LocusID (NCBI) 441430
Atlas_Id 60324
Location 9p11.2  [Link to chromosome band 9p11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ANKRD20A2P   31979
Cards
Entrez_Gene (NCBI)ANKRD20A2P  441430  ankyrin repeat domain 20 family member A2, pseudogene
AliasesANKRD20A2
GeneCards (Weizmann)ANKRD20A2P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  ANKRD20A2P [Vega]
TCGA cBioPortalANKRD20A2P
AceView (NCBI)ANKRD20A2P
Genatlas (Paris)ANKRD20A2P
WikiGenes441430
SOURCE (Princeton)ANKRD20A2P
Genetics Home Reference (NIH)ANKRD20A2P
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD20A2P  -  
GoldenPath hg19 (UCSC)ANKRD20A2P  -  
GoldenPathANKRD20A2P - [CytoView hg19]  ANKRD20A2P - [CytoView hg38]
genome Data Viewer NCBIANKRD20A2P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001012421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD20A2P
Gene ExpressionANKRD20A2P [ NCBI-GEO ]   ANKRD20A2P [ EBI - ARRAY_EXPRESS ]   ANKRD20A2P [ SEEK ]   ANKRD20A2P [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A2P [ Firebrowse - Broad ]
GenevisibleExpression of ANKRD20A2P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441430
GTEX Portal (Tissue expression)ANKRD20A2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQ80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQ80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQ80
Splice isoforms : SwissVarQ5SQ80
PhosPhoSitePlusQ5SQ80
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    CC144C-like_CC_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    CCDC144C (PF14915)   
Domain families : Pfam (NCBI)pfam12796    pfam14915   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A2P
DMDM Disease mutations441430
Blocks (Seattle)ANKRD20A2P
SuperfamilyQ5SQ80
Peptide AtlasQ5SQ80
HPRD18652
IPIIPI00644106   IPI00930540   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQ80
IntAct (EBI)Q5SQ80
BioGRIDANKRD20A2P
STRING (EMBL)ANKRD20A2P
ZODIACANKRD20A2P
Ontologies - Pathways
QuickGOQ5SQ80
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A2P
Atlas of Cancer Signalling NetworkANKRD20A2P
Wikipedia pathwaysANKRD20A2P
Orthology - Evolution
OrthoDB441430
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A2P
HOGENOMQ5SQ80
Homologs : HomoloGeneANKRD20A2P
Homology/Alignments : Family Browser (UCSC)ANKRD20A2P
Gene fusions - Rearrangements
Fusion : QuiverANKRD20A2P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A2P
dbVarANKRD20A2P
ClinVarANKRD20A2P
1000_GenomesANKRD20A2P 
Exome Variant ServerANKRD20A2P
Varsome BrowserANKRD20A2P
Genetic variants : HAPMAP441430
Genomic Variants (DGV)ANKRD20A2P [DGVbeta]
DECIPHERANKRD20A2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD20A2P 
Mutations
ICGC Data PortalANKRD20A2P 
TCGA Data PortalANKRD20A2P 
Broad Tumor PortalANKRD20A2P
OASIS PortalANKRD20A2P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD20A2P  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DANKRD20A2P
Mutations and Diseases : HGMDANKRD20A2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A2P
DgiDB (Drug Gene Interaction Database)ANKRD20A2P
DoCM (Curated mutations)ANKRD20A2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A2P (select a term)
intoGenANKRD20A2P
Cancer3DANKRD20A2P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD20A2P
MedgenANKRD20A2P
Genetic Testing Registry ANKRD20A2P
NextProtQ5SQ80 [Medical]
TSGene441430
GENETestsANKRD20A2P
Target ValidationANKRD20A2P
Huge Navigator ANKRD20A2P [HugePedia]
snp3D : Map Gene to Disease441430
BioCentury BCIQANKRD20A2P
ClinGenANKRD20A2P
Clinical trials, drugs, therapy
Protein Interactions : CTD441430
Pharm GKB GenePA142672619
Clinical trialANKRD20A2P
Miscellaneous
canSAR (ICR)ANKRD20A2P (select the gene name)
HarmonizomeANKRD20A2P
DataMed IndexANKRD20A2P
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A2P
EVEXANKRD20A2P
GoPubMedANKRD20A2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:02:55 CEST 2020

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