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ANKRD20A3 (ankyrin repeat domain 20 family, member A3)

Identity

Alias_namesankyrin repeat domain 20 family, member A3
Other alias-
HGNC (Hugo) ANKRD20A3
LocusID (NCBI) 441425
Atlas_Id 60325
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 42368337 and ends at 42411863 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A3   31981
Cards
Entrez_Gene (NCBI)ANKRD20A3  441425  ankyrin repeat domain 20 family, member A3
Aliases
GeneCards (Weizmann)ANKRD20A3
Ensembl hg19 (Hinxton)ENSG00000276203 [Gene_View]  chr9:42368337-42411863 [Contig_View]  ANKRD20A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000276203 [Gene_View]  chr9:42368337-42411863 [Contig_View]  ANKRD20A3 [Vega]
ICGC DataPortalENSG00000276203
TCGA cBioPortalANKRD20A3
AceView (NCBI)ANKRD20A3
Genatlas (Paris)ANKRD20A3
WikiGenes441425
SOURCE (Princeton)ANKRD20A3
Genetics Home Reference (NIH)ANKRD20A3
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD20A3  -     chr9:42368337-42411863 +  9p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD20A3  -     9p12   [Description]    (hg38-Dec_2013)
EnsemblANKRD20A3 - 9p12 [CytoView hg19]  ANKRD20A3 - 9p12 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A3 [Mapview hg19]  ANKRD20A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC111422 BC140809 BC167832 BC171793
RefSeq transcript (Entrez)NM_001012419
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_078055 NW_004929348
Consensus coding sequences : CCDS (NCBI)ANKRD20A3
Cluster EST : UnigeneHs.632663 [ NCBI ]
CGAP (NCI)Hs.632663
Alternative Splicing GalleryENSG00000276203
Gene ExpressionANKRD20A3 [ NCBI-GEO ]   ANKRD20A3 [ EBI - ARRAY_EXPRESS ]   ANKRD20A3 [ SEEK ]   ANKRD20A3 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441425
GTEX Portal (Tissue expression)ANKRD20A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUR7
Splice isoforms : SwissVarQ5VUR7
PhosPhoSitePlusQ5VUR7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A3
DMDM Disease mutations441425
Blocks (Seattle)ANKRD20A3
SuperfamilyQ5VUR7
Human Protein AtlasENSG00000276203
Peptide AtlasQ5VUR7
HPRD17405
IPIIPI00478457   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUR7
IntAct (EBI)Q5VUR7
FunCoupENSG00000276203
BioGRIDANKRD20A3
STRING (EMBL)ANKRD20A3
ZODIACANKRD20A3
Ontologies - Pathways
QuickGOQ5VUR7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A3
Atlas of Cancer Signalling NetworkANKRD20A3
Wikipedia pathwaysANKRD20A3
Orthology - Evolution
OrthoDB441425
GeneTree (enSembl)ENSG00000276203
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A3
HOVERGENQ5VUR7
HOGENOMQ5VUR7
Homologs : HomoloGeneANKRD20A3
Homology/Alignments : Family Browser (UCSC)ANKRD20A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A3
dbVarANKRD20A3
ClinVarANKRD20A3
1000_GenomesANKRD20A3 
Exome Variant ServerANKRD20A3
ExAC (Exome Aggregation Consortium)ANKRD20A3 (select the gene name)
Genetic variants : HAPMAP441425
Genomic Variants (DGV)ANKRD20A3 [DGVbeta]
DECIPHER (Syndromes)9:42368337-42411863  ENSG00000276203
CONAN: Copy Number AnalysisANKRD20A3 
Mutations
ICGC Data PortalANKRD20A3 
TCGA Data PortalANKRD20A3 
Broad Tumor PortalANKRD20A3
OASIS PortalANKRD20A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD20A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD20A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A3
DgiDB (Drug Gene Interaction Database)ANKRD20A3
DoCM (Curated mutations)ANKRD20A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A3 (select a term)
intoGenANKRD20A3
Cancer3DANKRD20A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A3
Genetic Testing Registry ANKRD20A3
NextProtQ5VUR7 [Medical]
TSGene441425
GENETestsANKRD20A3
Huge Navigator ANKRD20A3 [HugePedia]
snp3D : Map Gene to Disease441425
BioCentury BCIQANKRD20A3
ClinGenANKRD20A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441425
Chemical/Pharm GKB GenePA143485301
Clinical trialANKRD20A3
Miscellaneous
canSAR (ICR)ANKRD20A3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A3
EVEXANKRD20A3
GoPubMedANKRD20A3
iHOPANKRD20A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:21 CET 2017

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