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ANKRD20A4 (ankyrin repeat domain 20 family, member A4)

Identity

Alias_namesankyrin repeat domain 20 family, member A4
Alias_symbol (synonym)OTTHUMG00000066855
Other alias-
HGNC (Hugo) ANKRD20A4
LocusID (NCBI) 728747
Atlas_Id 60326
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 69381981 and ends at 69425109 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A4   31982
Cards
Entrez_Gene (NCBI)ANKRD20A4  728747  ankyrin repeat domain 20 family, member A4
Aliases
GeneCards (Weizmann)ANKRD20A4
Ensembl hg19 (Hinxton)ENSG00000172014 [Gene_View]  chr9:69381981-69425109 [Contig_View]  ANKRD20A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172014 [Gene_View]  chr9:69381981-69425109 [Contig_View]  ANKRD20A4 [Vega]
ICGC DataPortalENSG00000172014
TCGA cBioPortalANKRD20A4
AceView (NCBI)ANKRD20A4
Genatlas (Paris)ANKRD20A4
WikiGenes728747
SOURCE (Princeton)ANKRD20A4
Genetics Home Reference (NIH)ANKRD20A4
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD20A4  -     chr9:69381981-69425109 +  9q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD20A4  -     9q21.11   [Description]    (hg38-Dec_2013)
EnsemblANKRD20A4 - 9q21.11 [CytoView hg19]  ANKRD20A4 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A4 [Mapview hg19]  ANKRD20A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307323 DQ576528
RefSeq transcript (Entrez)NM_001098805
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_078070 NW_004929346
Consensus coding sequences : CCDS (NCBI)ANKRD20A4
Cluster EST : UnigeneHs.645502 [ NCBI ]
CGAP (NCI)Hs.645502
Alternative Splicing GalleryENSG00000172014
Gene ExpressionANKRD20A4 [ NCBI-GEO ]   ANKRD20A4 [ EBI - ARRAY_EXPRESS ]   ANKRD20A4 [ SEEK ]   ANKRD20A4 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728747
GTEX Portal (Tissue expression)ANKRD20A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4UJ75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4UJ75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4UJ75
Splice isoforms : SwissVarQ4UJ75
PhosPhoSitePlusQ4UJ75
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A4
DMDM Disease mutations728747
Blocks (Seattle)ANKRD20A4
SuperfamilyQ4UJ75
Human Protein AtlasENSG00000172014
Peptide AtlasQ4UJ75
IPIIPI00552956   
Protein Interaction databases
DIP (DOE-UCLA)Q4UJ75
IntAct (EBI)Q4UJ75
FunCoupENSG00000172014
BioGRIDANKRD20A4
STRING (EMBL)ANKRD20A4
ZODIACANKRD20A4
Ontologies - Pathways
QuickGOQ4UJ75
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A4
Atlas of Cancer Signalling NetworkANKRD20A4
Wikipedia pathwaysANKRD20A4
Orthology - Evolution
OrthoDB728747
GeneTree (enSembl)ENSG00000172014
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A4
HOVERGENQ4UJ75
HOGENOMQ4UJ75
Homologs : HomoloGeneANKRD20A4
Homology/Alignments : Family Browser (UCSC)ANKRD20A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A4
dbVarANKRD20A4
ClinVarANKRD20A4
1000_GenomesANKRD20A4 
Exome Variant ServerANKRD20A4
ExAC (Exome Aggregation Consortium)ANKRD20A4 (select the gene name)
Genetic variants : HAPMAP728747
Genomic Variants (DGV)ANKRD20A4 [DGVbeta]
DECIPHER (Syndromes)9:69381981-69425109  ENSG00000172014
CONAN: Copy Number AnalysisANKRD20A4 
Mutations
ICGC Data PortalANKRD20A4 
TCGA Data PortalANKRD20A4 
Broad Tumor PortalANKRD20A4
OASIS PortalANKRD20A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD20A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD20A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A4
DgiDB (Drug Gene Interaction Database)ANKRD20A4
DoCM (Curated mutations)ANKRD20A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A4 (select a term)
intoGenANKRD20A4
Cancer3DANKRD20A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A4
Genetic Testing Registry ANKRD20A4
NextProtQ4UJ75 [Medical]
TSGene728747
GENETestsANKRD20A4
Huge Navigator ANKRD20A4 [HugePedia]
snp3D : Map Gene to Disease728747
BioCentury BCIQANKRD20A4
ClinGenANKRD20A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728747
Chemical/Pharm GKB GenePA145149866
Clinical trialANKRD20A4
Miscellaneous
canSAR (ICR)ANKRD20A4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A4
EVEXANKRD20A4
GoPubMedANKRD20A4
iHOPANKRD20A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:21 CET 2017

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