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ANKRD20A5P (ankyrin repeat domain 20 family member A5, pseudogene)

Identity

Alias_namesANKRD20A5
ankyrin repeat domain 20 family, member A5
ankyrin repeat domain 20 family, member A5, pseudogene
Alias_symbol (synonym)MGC26718
Other alias
HGNC (Hugo) ANKRD20A5P
LocusID (NCBI) 440482
Atlas_Id 60327
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 14183941 and ends at 14189107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RHOT1 (17q11.2) / ANKRD20A5P (18p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A5P   33833
Cards
Entrez_Gene (NCBI)ANKRD20A5P  440482  ankyrin repeat domain 20 family member A5, pseudogene
AliasesANKRD20A5
GeneCards (Weizmann)ANKRD20A5P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:14183941-14189107 [Contig_View]  ANKRD20A5P [Vega]
TCGA cBioPortalANKRD20A5P
AceView (NCBI)ANKRD20A5P
Genatlas (Paris)ANKRD20A5P
WikiGenes440482
SOURCE (Princeton)ANKRD20A5P
Genetics Home Reference (NIH)ANKRD20A5P
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD20A5P  -     chr18:14183941-14189107 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD20A5P  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblANKRD20A5P - 18p11.21 [CytoView hg19]  ANKRD20A5P - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A5P [Mapview hg19]  ANKRD20A5P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092114 BC022023 BC127726 BP201899 DB446908
RefSeq transcript (Entrez)NM_001029999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD20A5P
Cluster EST : UnigeneHs.632352 [ NCBI ]
CGAP (NCI)Hs.632352
Gene ExpressionANKRD20A5P [ NCBI-GEO ]   ANKRD20A5P [ EBI - ARRAY_EXPRESS ]   ANKRD20A5P [ SEEK ]   ANKRD20A5P [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A5P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440482
GTEX Portal (Tissue expression)ANKRD20A5P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJZ0
Splice isoforms : SwissVarA0PJZ0
PhosPhoSitePlusA0PJZ0
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A5P
DMDM Disease mutations440482
Blocks (Seattle)ANKRD20A5P
SuperfamilyA0PJZ0
Peptide AtlasA0PJZ0
IPIIPI00455358   
Protein Interaction databases
DIP (DOE-UCLA)A0PJZ0
IntAct (EBI)A0PJZ0
BioGRIDANKRD20A5P
STRING (EMBL)ANKRD20A5P
ZODIACANKRD20A5P
Ontologies - Pathways
QuickGOA0PJZ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A5P
Atlas of Cancer Signalling NetworkANKRD20A5P
Wikipedia pathwaysANKRD20A5P
Orthology - Evolution
OrthoDB440482
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A5P
HOVERGENA0PJZ0
HOGENOMA0PJZ0
Homologs : HomoloGeneANKRD20A5P
Homology/Alignments : Family Browser (UCSC)ANKRD20A5P
Gene fusions - Rearrangements
Fusion: Tumor Portal ANKRD20A5P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A5P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A5P
dbVarANKRD20A5P
ClinVarANKRD20A5P
1000_GenomesANKRD20A5P 
Exome Variant ServerANKRD20A5P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP440482
Genomic Variants (DGV)ANKRD20A5P [DGVbeta]
DECIPHERANKRD20A5P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD20A5P 
Mutations
ICGC Data PortalANKRD20A5P 
TCGA Data PortalANKRD20A5P 
Broad Tumor PortalANKRD20A5P
OASIS PortalANKRD20A5P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD20A5P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD20A5P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A5P
DgiDB (Drug Gene Interaction Database)ANKRD20A5P
DoCM (Curated mutations)ANKRD20A5P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A5P (select a term)
intoGenANKRD20A5P
Cancer3DANKRD20A5P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A5P
Genetic Testing Registry ANKRD20A5P
NextProtA0PJZ0 [Medical]
TSGene440482
GENETestsANKRD20A5P
Target ValidationANKRD20A5P
Huge Navigator ANKRD20A5P [HugePedia]
snp3D : Map Gene to Disease440482
BioCentury BCIQANKRD20A5P
ClinGenANKRD20A5P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440482
Chemical/Pharm GKB GenePA164715315
Clinical trialANKRD20A5P
Miscellaneous
canSAR (ICR)ANKRD20A5P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A5P
EVEXANKRD20A5P
GoPubMedANKRD20A5P
iHOPANKRD20A5P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:43 CET 2017

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