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ANKRD20A8P (ankyrin repeat domain 20 family member A8, pseudogene)

Identity

Alias_namesANKRD20B
ankyrin repeat domain 20B
ankyrin repeat domain 20 family, member A8, pseudogene
Other alias
HGNC (Hugo) ANKRD20A8P
LocusID (NCBI) 729171
Atlas_Id 60328
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 94760928 and ends at 94857075 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD20A8P   23666
Cards
Entrez_Gene (NCBI)ANKRD20A8P  729171  ankyrin repeat domain 20 family member A8, pseudogene
AliasesANKRD20B
GeneCards (Weizmann)ANKRD20A8P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:94760928-94857075 [Contig_View]  ANKRD20A8P [Vega]
TCGA cBioPortalANKRD20A8P
AceView (NCBI)ANKRD20A8P
Genatlas (Paris)ANKRD20A8P
WikiGenes729171
SOURCE (Princeton)ANKRD20A8P
Genetics Home Reference (NIH)ANKRD20A8P
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD20A8P  -     chr2:94760928-94857075 -  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD20A8P  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD20A8P - 2q11.1 [CytoView hg19]  ANKRD20A8P - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD20A8P [Mapview hg19]  ANKRD20A8P [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR936649
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD20A8P
Cluster EST : UnigeneHs.456852 [ NCBI ]
CGAP (NCI)Hs.456852
Gene ExpressionANKRD20A8P [ NCBI-GEO ]   ANKRD20A8P [ EBI - ARRAY_EXPRESS ]   ANKRD20A8P [ SEEK ]   ANKRD20A8P [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD20A8P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729171
GTEX Portal (Tissue expression)ANKRD20A8P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5CZ79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5CZ79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5CZ79
Splice isoforms : SwissVarQ5CZ79
PhosPhoSitePlusQ5CZ79
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD20A8P
DMDM Disease mutations729171
Blocks (Seattle)ANKRD20A8P
SuperfamilyQ5CZ79
Peptide AtlasQ5CZ79
IPIIPI00889596   IPI00478693   
Protein Interaction databases
DIP (DOE-UCLA)Q5CZ79
IntAct (EBI)Q5CZ79
BioGRIDANKRD20A8P
STRING (EMBL)ANKRD20A8P
ZODIACANKRD20A8P
Ontologies - Pathways
QuickGOQ5CZ79
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD20A8P
Atlas of Cancer Signalling NetworkANKRD20A8P
Wikipedia pathwaysANKRD20A8P
Orthology - Evolution
OrthoDB729171
Phylogenetic Trees/Animal Genes : TreeFamANKRD20A8P
HOVERGENQ5CZ79
HOGENOMQ5CZ79
Homologs : HomoloGeneANKRD20A8P
Homology/Alignments : Family Browser (UCSC)ANKRD20A8P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD20A8P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD20A8P
dbVarANKRD20A8P
ClinVarANKRD20A8P
1000_GenomesANKRD20A8P 
Exome Variant ServerANKRD20A8P
ExAC (Exome Aggregation Consortium)ANKRD20A8P (select the gene name)
Genetic variants : HAPMAP729171
Genomic Variants (DGV)ANKRD20A8P [DGVbeta]
DECIPHERANKRD20A8P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD20A8P 
Mutations
ICGC Data PortalANKRD20A8P 
TCGA Data PortalANKRD20A8P 
Broad Tumor PortalANKRD20A8P
OASIS PortalANKRD20A8P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD20A8P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD20A8P
DgiDB (Drug Gene Interaction Database)ANKRD20A8P
DoCM (Curated mutations)ANKRD20A8P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD20A8P (select a term)
intoGenANKRD20A8P
Cancer3DANKRD20A8P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD20A8P
Genetic Testing Registry ANKRD20A8P
NextProtQ5CZ79 [Medical]
TSGene729171
GENETestsANKRD20A8P
Target ValidationANKRD20A8P
Huge Navigator ANKRD20A8P [HugePedia]
snp3D : Map Gene to Disease729171
BioCentury BCIQANKRD20A8P
ClinGenANKRD20A8P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729171
Chemical/Pharm GKB GenePA134914536
Clinical trialANKRD20A8P
Miscellaneous
canSAR (ICR)ANKRD20A8P (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD20A8P
EVEXANKRD20A8P
GoPubMedANKRD20A8P
iHOPANKRD20A8P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:21 CEST 2017

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