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ANKRD23 (ankyrin repeat domain 23)

Identity

Alias_symbol (synonym)DARP
FLJ32449
MARP3
Other alias
HGNC (Hugo) ANKRD23
LocusID (NCBI) 200539
Atlas_Id 54123
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96837914 and ends at 96844021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD39 (2q11.2) / ANKRD23 (2q11.2)CNNM3 (2q11.2) / ANKRD23 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD23   24470
Cards
Entrez_Gene (NCBI)ANKRD23  200539  ankyrin repeat domain 23
AliasesDARP; MARP3
GeneCards (Weizmann)ANKRD23
Ensembl hg19 (Hinxton)ENSG00000163126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163126 [Gene_View]  chr2:96837914-96844021 [Contig_View]  ANKRD23 [Vega]
ICGC DataPortalENSG00000163126
TCGA cBioPortalANKRD23
AceView (NCBI)ANKRD23
Genatlas (Paris)ANKRD23
WikiGenes200539
SOURCE (Princeton)ANKRD23
Genetics Home Reference (NIH)ANKRD23
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD23  -     chr2:96837914-96844021 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD23  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD23 - 2q11.2 [CytoView hg19]  ANKRD23 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD23 [Mapview hg19]  ANKRD23 [Mapview hg38]
OMIM610736   
Gene and transcription
Genbank (Entrez)AF492401 AJ315766 AK057011 AK092564 AY196212
RefSeq transcript (Entrez)NM_144994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD23
Cluster EST : UnigeneHs.643430 [ NCBI ]
CGAP (NCI)Hs.643430
Alternative Splicing GalleryENSG00000163126
Gene ExpressionANKRD23 [ NCBI-GEO ]   ANKRD23 [ EBI - ARRAY_EXPRESS ]   ANKRD23 [ SEEK ]   ANKRD23 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200539
GTEX Portal (Tissue expression)ANKRD23
Human Protein AtlasENSG00000163126-ANKRD23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SG2
Splice isoforms : SwissVarQ86SG2
PhosPhoSitePlusQ86SG2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ank_3 (PF13606)   
Domain families : Pfam (NCBI)pfam12796    pfam13606   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD23
DMDM Disease mutations200539
Blocks (Seattle)ANKRD23
SuperfamilyQ86SG2
Human Protein Atlas [tissue]ENSG00000163126-ANKRD23 [tissue]
Peptide AtlasQ86SG2
HPRD12462
IPIIPI00176397   IPI00300665   IPI00335273   
Protein Interaction databases
DIP (DOE-UCLA)Q86SG2
IntAct (EBI)Q86SG2
FunCoupENSG00000163126
BioGRIDANKRD23
STRING (EMBL)ANKRD23
ZODIACANKRD23
Ontologies - Pathways
QuickGOQ86SG2
Ontology : AmiGOnucleoplasm  cytosol  response to mechanical stimulus  intercalated disc  actin cytoskeleton  myofibril  titin binding  
Ontology : EGO-EBInucleoplasm  cytosol  response to mechanical stimulus  intercalated disc  actin cytoskeleton  myofibril  titin binding  
NDEx NetworkANKRD23
Atlas of Cancer Signalling NetworkANKRD23
Wikipedia pathwaysANKRD23
Orthology - Evolution
OrthoDB200539
GeneTree (enSembl)ENSG00000163126
Phylogenetic Trees/Animal Genes : TreeFamANKRD23
HOVERGENQ86SG2
HOGENOMQ86SG2
Homologs : HomoloGeneANKRD23
Homology/Alignments : Family Browser (UCSC)ANKRD23
Gene fusions - Rearrangements
Fusion : MitelmanCNNM3/ANKRD23 [2q11.2/2q11.2]  [t(2;2)(q11;q11)]  
Tumor Fusion PortalANKRD23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD23
dbVarANKRD23
ClinVarANKRD23
1000_GenomesANKRD23 
Exome Variant ServerANKRD23
ExAC (Exome Aggregation Consortium)ENSG00000163126
GNOMAD BrowserENSG00000163126
Genetic variants : HAPMAP200539
Genomic Variants (DGV)ANKRD23 [DGVbeta]
DECIPHERANKRD23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD23 
Mutations
ICGC Data PortalANKRD23 
TCGA Data PortalANKRD23 
Broad Tumor PortalANKRD23
OASIS PortalANKRD23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD23
DgiDB (Drug Gene Interaction Database)ANKRD23
DoCM (Curated mutations)ANKRD23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD23 (select a term)
intoGenANKRD23
Cancer3DANKRD23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610736   
Orphanet
DisGeNETANKRD23
MedgenANKRD23
Genetic Testing Registry ANKRD23
NextProtQ86SG2 [Medical]
TSGene200539
GENETestsANKRD23
Target ValidationANKRD23
Huge Navigator ANKRD23 [HugePedia]
snp3D : Map Gene to Disease200539
BioCentury BCIQANKRD23
ClinGenANKRD23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200539
Chemical/Pharm GKB GenePA134960626
Clinical trialANKRD23
Miscellaneous
canSAR (ICR)ANKRD23 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD23
EVEXANKRD23
GoPubMedANKRD23
iHOPANKRD23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:02 CET 2017

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