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ANKRD26P1 (ankyrin repeat domain 26 pseudogene 1)

Identity

Alias_symbol (synonym)FLJ43980
Other alias-
HGNC (Hugo) ANKRD26P1
LocusID (NCBI) 124149
Atlas_Id 54124
Location 16q11.2  [Link to chromosome band 16q11]
Location_base_pair Starts at 46503251 and ends at 46513144 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD26P1 (16q11.2) / SLC4A10 (2q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ANKRD26P1   32955
Cards
Entrez_Gene (NCBI)ANKRD26P1  124149  ankyrin repeat domain 26 pseudogene 1
Aliases
GeneCards (Weizmann)ANKRD26P1
Ensembl hg19 (Hinxton) [Gene_View]  chr16:46503251-46513144 [Contig_View]  ANKRD26P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:46503251-46513144 [Contig_View]  ANKRD26P1 [Vega]
TCGA cBioPortalANKRD26P1
AceView (NCBI)ANKRD26P1
Genatlas (Paris)ANKRD26P1
WikiGenes124149
SOURCE (Princeton)ANKRD26P1
Genetics Home Reference (NIH)ANKRD26P1
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD26P1  -     chr16:46503251-46513144 -  16q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD26P1  -     16q11.2   [Description]    (hg38-Dec_2013)
EnsemblANKRD26P1 - 16q11.2 [CytoView hg19]  ANKRD26P1 - 16q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD26P1 [Mapview hg19]  ANKRD26P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125968 BC070117 BX648636 CD000265 CR749347
RefSeq transcript (Entrez)NM_001004299
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ANKRD26P1
Cluster EST : UnigeneHs.97414 [ NCBI ]
CGAP (NCI)Hs.97414
Gene ExpressionANKRD26P1 [ NCBI-GEO ]   ANKRD26P1 [ EBI - ARRAY_EXPRESS ]   ANKRD26P1 [ SEEK ]   ANKRD26P1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD26P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124149
GTEX Portal (Tissue expression)ANKRD26P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSI1
Splice isoforms : SwissVarQ6NSI1
PhosPhoSitePlusQ6NSI1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD26P1
DMDM Disease mutations124149
Blocks (Seattle)ANKRD26P1
SuperfamilyQ6NSI1
Peptide AtlasQ6NSI1
HPRD13482
IPIIPI01009511   IPI00412107   IPI01018177   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSI1
IntAct (EBI)Q6NSI1
BioGRIDANKRD26P1
STRING (EMBL)ANKRD26P1
ZODIACANKRD26P1
Ontologies - Pathways
QuickGOQ6NSI1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkANKRD26P1
Atlas of Cancer Signalling NetworkANKRD26P1
Wikipedia pathwaysANKRD26P1
Orthology - Evolution
OrthoDB124149
Phylogenetic Trees/Animal Genes : TreeFamANKRD26P1
HOVERGENQ6NSI1
HOGENOMQ6NSI1
Homologs : HomoloGeneANKRD26P1
Homology/Alignments : Family Browser (UCSC)ANKRD26P1
Gene fusions - Rearrangements
Fusion : MitelmanANKRD26P1/SLC4A10 [16q11.2/2q24.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD26P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD26P1
dbVarANKRD26P1
ClinVarANKRD26P1
1000_GenomesANKRD26P1 
Exome Variant ServerANKRD26P1
ExAC (Exome Aggregation Consortium)ANKRD26P1 (select the gene name)
Genetic variants : HAPMAP124149
Genomic Variants (DGV)ANKRD26P1 [DGVbeta]
DECIPHER (Syndromes)16:46503251-46513144  
CONAN: Copy Number AnalysisANKRD26P1 
Mutations
ICGC Data PortalANKRD26P1 
TCGA Data PortalANKRD26P1 
Broad Tumor PortalANKRD26P1
OASIS PortalANKRD26P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD26P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD26P1
DgiDB (Drug Gene Interaction Database)ANKRD26P1
DoCM (Curated mutations)ANKRD26P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD26P1 (select a term)
intoGenANKRD26P1
Cancer3DANKRD26P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD26P1
Genetic Testing Registry ANKRD26P1
NextProtQ6NSI1 [Medical]
TSGene124149
GENETestsANKRD26P1
Huge Navigator ANKRD26P1 [HugePedia]
snp3D : Map Gene to Disease124149
BioCentury BCIQANKRD26P1
ClinGenANKRD26P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124149
Clinical trialANKRD26P1
Miscellaneous
canSAR (ICR)ANKRD26P1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD26P1
EVEXANKRD26P1
GoPubMedANKRD26P1
iHOPANKRD26P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:52:25 CEST 2017

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