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ANKRD29 (ankyrin repeat domain 29)

Identity

Alias_symbol (synonym)FLJ25053
Other alias-
HGNC (Hugo) ANKRD29
LocusID (NCBI) 147463
Atlas_Id 60334
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 21178890 and ends at 21242849 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGEF12 (11q23.3) / ANKRD29 (18q11.2)SERGEF (11p15.1) / ANKRD29 (18q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD29   27110
Cards
Entrez_Gene (NCBI)ANKRD29  147463  ankyrin repeat domain 29
Aliases
GeneCards (Weizmann)ANKRD29
Ensembl hg19 (Hinxton)ENSG00000154065 [Gene_View]  chr18:21178890-21242849 [Contig_View]  ANKRD29 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154065 [Gene_View]  chr18:21178890-21242849 [Contig_View]  ANKRD29 [Vega]
ICGC DataPortalENSG00000154065
TCGA cBioPortalANKRD29
AceView (NCBI)ANKRD29
Genatlas (Paris)ANKRD29
WikiGenes147463
SOURCE (Princeton)ANKRD29
Genetics Home Reference (NIH)ANKRD29
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD29  -     chr18:21178890-21242849 -  18q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD29  -     18q11.2   [Description]    (hg38-Dec_2013)
EnsemblANKRD29 - 18q11.2 [CytoView hg19]  ANKRD29 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD29 [Mapview hg19]  ANKRD29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI073766 AK057782 AK123197 AK313667 BC030622
RefSeq transcript (Entrez)NM_001308238 NM_173505
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)ANKRD29
Cluster EST : UnigeneHs.374774 [ NCBI ]
CGAP (NCI)Hs.374774
Alternative Splicing GalleryENSG00000154065
Gene ExpressionANKRD29 [ NCBI-GEO ]   ANKRD29 [ EBI - ARRAY_EXPRESS ]   ANKRD29 [ SEEK ]   ANKRD29 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147463
GTEX Portal (Tissue expression)ANKRD29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6D5
Splice isoforms : SwissVarQ8N6D5
PhosPhoSitePlusQ8N6D5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD29
DMDM Disease mutations147463
Blocks (Seattle)ANKRD29
SuperfamilyQ8N6D5
Human Protein AtlasENSG00000154065
Peptide AtlasQ8N6D5
HPRD12464
IPIIPI00176931   IPI00760587   IPI00166991   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6D5
IntAct (EBI)Q8N6D5
FunCoupENSG00000154065
BioGRIDANKRD29
STRING (EMBL)ANKRD29
ZODIACANKRD29
Ontologies - Pathways
QuickGOQ8N6D5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD29
Atlas of Cancer Signalling NetworkANKRD29
Wikipedia pathwaysANKRD29
Orthology - Evolution
OrthoDB147463
GeneTree (enSembl)ENSG00000154065
Phylogenetic Trees/Animal Genes : TreeFamANKRD29
HOVERGENQ8N6D5
HOGENOMQ8N6D5
Homologs : HomoloGeneANKRD29
Homology/Alignments : Family Browser (UCSC)ANKRD29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD29
dbVarANKRD29
ClinVarANKRD29
1000_GenomesANKRD29 
Exome Variant ServerANKRD29
ExAC (Exome Aggregation Consortium)ANKRD29 (select the gene name)
Genetic variants : HAPMAP147463
Genomic Variants (DGV)ANKRD29 [DGVbeta]
DECIPHER (Syndromes)18:21178890-21242849  ENSG00000154065
CONAN: Copy Number AnalysisANKRD29 
Mutations
ICGC Data PortalANKRD29 
TCGA Data PortalANKRD29 
Broad Tumor PortalANKRD29
OASIS PortalANKRD29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD29
DgiDB (Drug Gene Interaction Database)ANKRD29
DoCM (Curated mutations)ANKRD29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD29 (select a term)
intoGenANKRD29
Cancer3DANKRD29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD29
Genetic Testing Registry ANKRD29
NextProtQ8N6D5 [Medical]
TSGene147463
GENETestsANKRD29
Huge Navigator ANKRD29 [HugePedia]
snp3D : Map Gene to Disease147463
BioCentury BCIQANKRD29
ClinGenANKRD29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147463
Chemical/Pharm GKB GenePA134948058
Clinical trialANKRD29
Miscellaneous
canSAR (ICR)ANKRD29 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD29
EVEXANKRD29
GoPubMedANKRD29
iHOPANKRD29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:23 CET 2017

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