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ANKRD30B (ankyrin repeat domain 30B)

Identity

Alias_symbol (synonym)NY-BR-1.1
Other alias
HGNC (Hugo) ANKRD30B
LocusID (NCBI) 374860
Atlas_Id 41597
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 14748240 and ends at 14852738 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD30B   24165
Cards
Entrez_Gene (NCBI)ANKRD30B  374860  ankyrin repeat domain 30B
AliasesNY-BR-1.1
GeneCards (Weizmann)ANKRD30B
Ensembl hg19 (Hinxton)ENSG00000180777 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180777 [Gene_View]  chr18:14748240-14852738 [Contig_View]  ANKRD30B [Vega]
ICGC DataPortalENSG00000180777
TCGA cBioPortalANKRD30B
AceView (NCBI)ANKRD30B
Genatlas (Paris)ANKRD30B
WikiGenes374860
SOURCE (Princeton)ANKRD30B
Genetics Home Reference (NIH)ANKRD30B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD30B  -     chr18:14748240-14852738 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD30B  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblANKRD30B - 18p11.21 [CytoView hg19]  ANKRD30B - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIANKRD30B [Mapview hg19]  ANKRD30B [Mapview hg38]
OMIM616565   
Gene and transcription
Genbank (Entrez)AF269088 AK294693 BC028407
RefSeq transcript (Entrez)NM_001029862 NM_001145029
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD30B
Cluster EST : UnigeneHs.567889 [ NCBI ]
CGAP (NCI)Hs.567889
Alternative Splicing GalleryENSG00000180777
Gene ExpressionANKRD30B [ NCBI-GEO ]   ANKRD30B [ EBI - ARRAY_EXPRESS ]   ANKRD30B [ SEEK ]   ANKRD30B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD30B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374860
GTEX Portal (Tissue expression)ANKRD30B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXX2
Splice isoforms : SwissVarQ9BXX2
PhosPhoSitePlusQ9BXX2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD30B
DMDM Disease mutations374860
Blocks (Seattle)ANKRD30B
SuperfamilyQ9BXX2
Human Protein AtlasENSG00000180777
Peptide AtlasQ9BXX2
IPIIPI00889594   IPI00921426   IPI00940817   IPI01025528   IPI00939408   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXX2
IntAct (EBI)Q9BXX2
FunCoupENSG00000180777
BioGRIDANKRD30B
STRING (EMBL)ANKRD30B
ZODIACANKRD30B
Ontologies - Pathways
QuickGOQ9BXX2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkANKRD30B
Atlas of Cancer Signalling NetworkANKRD30B
Wikipedia pathwaysANKRD30B
Orthology - Evolution
OrthoDB374860
GeneTree (enSembl)ENSG00000180777
Phylogenetic Trees/Animal Genes : TreeFamANKRD30B
HOVERGENQ9BXX2
HOGENOMQ9BXX2
Homologs : HomoloGeneANKRD30B
Homology/Alignments : Family Browser (UCSC)ANKRD30B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD30B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD30B
dbVarANKRD30B
ClinVarANKRD30B
1000_GenomesANKRD30B 
Exome Variant ServerANKRD30B
ExAC (Exome Aggregation Consortium)ANKRD30B (select the gene name)
Genetic variants : HAPMAP374860
Genomic Variants (DGV)ANKRD30B [DGVbeta]
DECIPHERANKRD30B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD30B 
Mutations
ICGC Data PortalANKRD30B 
TCGA Data PortalANKRD30B 
Broad Tumor PortalANKRD30B
OASIS PortalANKRD30B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD30B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD30B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD30B
DgiDB (Drug Gene Interaction Database)ANKRD30B
DoCM (Curated mutations)ANKRD30B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD30B (select a term)
intoGenANKRD30B
Cancer3DANKRD30B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616565   
Orphanet
MedgenANKRD30B
Genetic Testing Registry ANKRD30B
NextProtQ9BXX2 [Medical]
TSGene374860
GENETestsANKRD30B
Target ValidationANKRD30B
Huge Navigator ANKRD30B [HugePedia]
snp3D : Map Gene to Disease374860
BioCentury BCIQANKRD30B
ClinGenANKRD30B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374860
Chemical/Pharm GKB GenePA134980028
Clinical trialANKRD30B
Miscellaneous
canSAR (ICR)ANKRD30B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD30B
EVEXANKRD30B
GoPubMedANKRD30B
iHOPANKRD30B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:57:17 CEST 2017

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