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ANKRD30BL (ankyrin repeat domain 30B like)

Identity

Alias_namesNCRNA00164
ANKRD30BP3
non-protein coding RNA 164
ankyrin repeat domain 30B pseudogene 3
Other alias
HGNC (Hugo) ANKRD30BL
LocusID (NCBI) 554226
Atlas_Id 54126
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 132147591 and ends at 132161952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
R3HDM1 (2q21.3) / ANKRD30BL (2q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD30BL   35167
Cards
Entrez_Gene (NCBI)ANKRD30BL  554226  ankyrin repeat domain 30B like
AliasesANKRD30BP3; NCRNA00164
GeneCards (Weizmann)ANKRD30BL
Ensembl hg19 (Hinxton)ENSG00000163046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163046 [Gene_View]  chr2:132147591-132161952 [Contig_View]  ANKRD30BL [Vega]
ICGC DataPortalENSG00000163046
TCGA cBioPortalANKRD30BL
AceView (NCBI)ANKRD30BL
Genatlas (Paris)ANKRD30BL
WikiGenes554226
SOURCE (Princeton)ANKRD30BL
Genetics Home Reference (NIH)ANKRD30BL
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD30BL  -     chr2:132147591-132161952 -  2q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD30BL  -     2q21.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD30BL - 2q21.2 [CytoView hg19]  ANKRD30BL - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD30BL [Mapview hg19]  ANKRD30BL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029821 BC045801 BC057764 BC150521 BG719107
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD30BL
Cluster EST : UnigeneHs.380689 [ NCBI ]
CGAP (NCI)Hs.380689
Alternative Splicing GalleryENSG00000163046
Gene ExpressionANKRD30BL [ NCBI-GEO ]   ANKRD30BL [ EBI - ARRAY_EXPRESS ]   ANKRD30BL [ SEEK ]   ANKRD30BL [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD30BL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554226
GTEX Portal (Tissue expression)ANKRD30BL
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7E2S9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7E2S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7E2S9
Splice isoforms : SwissVarA7E2S9
PhosPhoSitePlusA7E2S9
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD30BL
DMDM Disease mutations554226
Blocks (Seattle)ANKRD30BL
SuperfamilyA7E2S9
Human Protein AtlasENSG00000163046
Peptide AtlasA7E2S9
IPIIPI00915765   IPI00887420   IPI01017952   
Protein Interaction databases
DIP (DOE-UCLA)A7E2S9
IntAct (EBI)A7E2S9
FunCoupENSG00000163046
BioGRIDANKRD30BL
STRING (EMBL)ANKRD30BL
ZODIACANKRD30BL
Ontologies - Pathways
QuickGOA7E2S9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD30BL
Atlas of Cancer Signalling NetworkANKRD30BL
Wikipedia pathwaysANKRD30BL
Orthology - Evolution
OrthoDB554226
GeneTree (enSembl)ENSG00000163046
Phylogenetic Trees/Animal Genes : TreeFamANKRD30BL
HOVERGENA7E2S9
HOGENOMA7E2S9
Homologs : HomoloGeneANKRD30BL
Homology/Alignments : Family Browser (UCSC)ANKRD30BL
Gene fusions - Rearrangements
Fusion : MitelmanR3HDM1/ANKRD30BL [2q21.3/2q21.2]  [t(2;2)(q21;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD30BL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD30BL
dbVarANKRD30BL
ClinVarANKRD30BL
1000_GenomesANKRD30BL 
Exome Variant ServerANKRD30BL
ExAC (Exome Aggregation Consortium)ANKRD30BL (select the gene name)
Genetic variants : HAPMAP554226
Genomic Variants (DGV)ANKRD30BL [DGVbeta]
DECIPHERANKRD30BL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD30BL 
Mutations
ICGC Data PortalANKRD30BL 
TCGA Data PortalANKRD30BL 
Broad Tumor PortalANKRD30BL
OASIS PortalANKRD30BL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD30BL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD30BL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD30BL
DgiDB (Drug Gene Interaction Database)ANKRD30BL
DoCM (Curated mutations)ANKRD30BL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD30BL (select a term)
intoGenANKRD30BL
Cancer3DANKRD30BL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD30BL
Genetic Testing Registry ANKRD30BL
NextProtA7E2S9 [Medical]
TSGene554226
GENETestsANKRD30BL
Target ValidationANKRD30BL
Huge Navigator ANKRD30BL [HugePedia]
snp3D : Map Gene to Disease554226
BioCentury BCIQANKRD30BL
ClinGenANKRD30BL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554226
Chemical/Pharm GKB GenePA166049020
Clinical trialANKRD30BL
Miscellaneous
canSAR (ICR)ANKRD30BL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD30BL
EVEXANKRD30BL
GoPubMedANKRD30BL
iHOPANKRD30BL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:55:00 CEST 2017

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