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ANKRD33 (ankyrin repeat domain 33)

Identity

Alias_namesC12orf7
chromosome 12 open reading frame 7
Alias_symbol (synonym)DKFZp686O1689
PANKY
Other alias
HGNC (Hugo) ANKRD33
LocusID (NCBI) 341405
Atlas_Id 60338
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 51888009 and ends at 51891721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD33   13788
Cards
Entrez_Gene (NCBI)ANKRD33  341405  ankyrin repeat domain 33
AliasesC12orf7; PANKY
GeneCards (Weizmann)ANKRD33
Ensembl hg19 (Hinxton)ENSG00000167612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167612 [Gene_View]  chr12:51888009-51891721 [Contig_View]  ANKRD33 [Vega]
ICGC DataPortalENSG00000167612
TCGA cBioPortalANKRD33
AceView (NCBI)ANKRD33
Genatlas (Paris)ANKRD33
WikiGenes341405
SOURCE (Princeton)ANKRD33
Genetics Home Reference (NIH)ANKRD33
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD33  -     chr12:51888009-51891721 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD33  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblANKRD33 - 12q13.13 [CytoView hg19]  ANKRD33 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIANKRD33 [Mapview hg19]  ANKRD33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF517108 AF517109 AF517110 AF517111 AF517112
RefSeq transcript (Entrez)NM_001130015 NM_001304459 NM_001304460 NM_182608
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD33
Cluster EST : UnigeneHs.433492 [ NCBI ]
CGAP (NCI)Hs.433492
Alternative Splicing GalleryENSG00000167612
Gene ExpressionANKRD33 [ NCBI-GEO ]   ANKRD33 [ EBI - ARRAY_EXPRESS ]   ANKRD33 [ SEEK ]   ANKRD33 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341405
GTEX Portal (Tissue expression)ANKRD33
Human Protein AtlasENSG00000167612-ANKRD33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3H0
Splice isoforms : SwissVarQ7Z3H0
PhosPhoSitePlusQ7Z3H0
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD33
DMDM Disease mutations341405
Blocks (Seattle)ANKRD33
SuperfamilyQ7Z3H0
Human Protein Atlas [tissue]ENSG00000167612-ANKRD33 [tissue]
Peptide AtlasQ7Z3H0
HPRD12465
IPIIPI00760822   IPI00414254   IPI01012257   IPI00816222   IPI01021627   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3H0
IntAct (EBI)Q7Z3H0
FunCoupENSG00000167612
BioGRIDANKRD33
STRING (EMBL)ANKRD33
ZODIACANKRD33
Ontologies - Pathways
QuickGOQ7Z3H0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  cytosol  skeletal muscle cell differentiation  negative regulation of transcription regulatory region DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  cytosol  skeletal muscle cell differentiation  negative regulation of transcription regulatory region DNA binding  
NDEx NetworkANKRD33
Atlas of Cancer Signalling NetworkANKRD33
Wikipedia pathwaysANKRD33
Orthology - Evolution
OrthoDB341405
GeneTree (enSembl)ENSG00000167612
Phylogenetic Trees/Animal Genes : TreeFamANKRD33
HOVERGENQ7Z3H0
HOGENOMQ7Z3H0
Homologs : HomoloGeneANKRD33
Homology/Alignments : Family Browser (UCSC)ANKRD33
Gene fusions - Rearrangements
Fusion: Tumor Portal ANKRD33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD33
dbVarANKRD33
ClinVarANKRD33
1000_GenomesANKRD33 
Exome Variant ServerANKRD33
ExAC (Exome Aggregation Consortium)ENSG00000167612
GNOMAD BrowserENSG00000167612
Genetic variants : HAPMAP341405
Genomic Variants (DGV)ANKRD33 [DGVbeta]
DECIPHERANKRD33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD33 
Mutations
ICGC Data PortalANKRD33 
TCGA Data PortalANKRD33 
Broad Tumor PortalANKRD33
OASIS PortalANKRD33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD33
DgiDB (Drug Gene Interaction Database)ANKRD33
DoCM (Curated mutations)ANKRD33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD33 (select a term)
intoGenANKRD33
Cancer3DANKRD33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD33
Genetic Testing Registry ANKRD33
NextProtQ7Z3H0 [Medical]
TSGene341405
GENETestsANKRD33
Target ValidationANKRD33
Huge Navigator ANKRD33 [HugePedia]
snp3D : Map Gene to Disease341405
BioCentury BCIQANKRD33
ClinGenANKRD33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341405
Chemical/Pharm GKB GenePA25508
Clinical trialANKRD33
Miscellaneous
canSAR (ICR)ANKRD33 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD33
EVEXANKRD33
GoPubMedANKRD33
iHOPANKRD33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:45 CET 2017

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