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ANKRD33B (ankyrin repeat domain 33B)

Identity

Other alias-
HGNC (Hugo) ANKRD33B
LocusID (NCBI) 651746
Atlas_Id 60339
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10564323 and ends at 10657816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD33B   35240
Cards
Entrez_Gene (NCBI)ANKRD33B  651746  ankyrin repeat domain 33B
Aliases
GeneCards (Weizmann)ANKRD33B
Ensembl hg19 (Hinxton)ENSG00000164236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164236 [Gene_View]  chr5:10564323-10657816 [Contig_View]  ANKRD33B [Vega]
ICGC DataPortalENSG00000164236
TCGA cBioPortalANKRD33B
AceView (NCBI)ANKRD33B
Genatlas (Paris)ANKRD33B
WikiGenes651746
SOURCE (Princeton)ANKRD33B
Genetics Home Reference (NIH)ANKRD33B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD33B  -     chr5:10564323-10657816 +  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD33B  -     5p15.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD33B - 5p15.2 [CytoView hg19]  ANKRD33B - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD33B [Mapview hg19]  ANKRD33B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF056441 AK023999 BC018597
RefSeq transcript (Entrez)NM_001164440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD33B
Cluster EST : UnigeneHs.26039 [ NCBI ]
CGAP (NCI)Hs.26039
Alternative Splicing GalleryENSG00000164236
Gene ExpressionANKRD33B [ NCBI-GEO ]   ANKRD33B [ EBI - ARRAY_EXPRESS ]   ANKRD33B [ SEEK ]   ANKRD33B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD33B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)651746
GTEX Portal (Tissue expression)ANKRD33B
Human Protein AtlasENSG00000164236-ANKRD33B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCL7
Splice isoforms : SwissVarA6NCL7
PhosPhoSitePlusA6NCL7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD33B
DMDM Disease mutations651746
Blocks (Seattle)ANKRD33B
SuperfamilyA6NCL7
Human Protein Atlas [tissue]ENSG00000164236-ANKRD33B [tissue]
Peptide AtlasA6NCL7
IPIIPI00235708   IPI00966888   
Protein Interaction databases
DIP (DOE-UCLA)A6NCL7
IntAct (EBI)A6NCL7
FunCoupENSG00000164236
BioGRIDANKRD33B
STRING (EMBL)ANKRD33B
ZODIACANKRD33B
Ontologies - Pathways
QuickGOA6NCL7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD33B
Atlas of Cancer Signalling NetworkANKRD33B
Wikipedia pathwaysANKRD33B
Orthology - Evolution
OrthoDB651746
GeneTree (enSembl)ENSG00000164236
Phylogenetic Trees/Animal Genes : TreeFamANKRD33B
HOVERGENA6NCL7
HOGENOMA6NCL7
Homologs : HomoloGeneANKRD33B
Homology/Alignments : Family Browser (UCSC)ANKRD33B
Gene fusions - Rearrangements
Fusion: Tumor Portal ANKRD33B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD33B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD33B
dbVarANKRD33B
ClinVarANKRD33B
1000_GenomesANKRD33B 
Exome Variant ServerANKRD33B
ExAC (Exome Aggregation Consortium)ENSG00000164236
GNOMAD BrowserENSG00000164236
Genetic variants : HAPMAP651746
Genomic Variants (DGV)ANKRD33B [DGVbeta]
DECIPHERANKRD33B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD33B 
Mutations
ICGC Data PortalANKRD33B 
TCGA Data PortalANKRD33B 
Broad Tumor PortalANKRD33B
OASIS PortalANKRD33B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD33B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD33B
DgiDB (Drug Gene Interaction Database)ANKRD33B
DoCM (Curated mutations)ANKRD33B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD33B (select a term)
intoGenANKRD33B
Cancer3DANKRD33B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD33B
Genetic Testing Registry ANKRD33B
NextProtA6NCL7 [Medical]
TSGene651746
GENETestsANKRD33B
Target ValidationANKRD33B
Huge Navigator ANKRD33B [HugePedia]
snp3D : Map Gene to Disease651746
BioCentury BCIQANKRD33B
ClinGenANKRD33B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD651746
Chemical/Pharm GKB GenePA164715326
Clinical trialANKRD33B
Miscellaneous
canSAR (ICR)ANKRD33B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD33B
EVEXANKRD33B
GoPubMedANKRD33B
iHOPANKRD33B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:37:45 CET 2017

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