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ANKRD34A (ankyrin repeat domain 34A)

Identity

Alias_namesANKRD34
ankyrin repeat domain 34
Other alias
HGNC (Hugo) ANKRD34A
LocusID (NCBI) 284615
Atlas_Id 60340
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145959441 and ends at 145964582 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD34A   27639
Cards
Entrez_Gene (NCBI)ANKRD34A  284615  ankyrin repeat domain 34A
AliasesANKRD34
GeneCards (Weizmann)ANKRD34A
Ensembl hg19 (Hinxton)ENSG00000272031 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272031 [Gene_View]  chr1:145959441-145964582 [Contig_View]  ANKRD34A [Vega]
ICGC DataPortalENSG00000272031
TCGA cBioPortalANKRD34A
AceView (NCBI)ANKRD34A
Genatlas (Paris)ANKRD34A
WikiGenes284615
SOURCE (Princeton)ANKRD34A
Genetics Home Reference (NIH)ANKRD34A
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD34A  -     chr1:145959441-145964582 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD34A  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD34A - 1q21.1 [CytoView hg19]  ANKRD34A - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD34A [Mapview hg19]  ANKRD34A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094282 AK128050 AL359622 BM723295 DA081864
RefSeq transcript (Entrez)NM_001039888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD34A
Cluster EST : UnigeneHs.620591 [ NCBI ]
CGAP (NCI)Hs.620591
Alternative Splicing GalleryENSG00000272031
Gene ExpressionANKRD34A [ NCBI-GEO ]   ANKRD34A [ EBI - ARRAY_EXPRESS ]   ANKRD34A [ SEEK ]   ANKRD34A [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD34A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284615
GTEX Portal (Tissue expression)ANKRD34A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YU3
Splice isoforms : SwissVarQ69YU3
PhosPhoSitePlusQ69YU3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD34A
DMDM Disease mutations284615
Blocks (Seattle)ANKRD34A
SuperfamilyQ69YU3
Human Protein AtlasENSG00000272031
Peptide AtlasQ69YU3
IPIIPI00465409   
Protein Interaction databases
DIP (DOE-UCLA)Q69YU3
IntAct (EBI)Q69YU3
FunCoupENSG00000272031
BioGRIDANKRD34A
STRING (EMBL)ANKRD34A
ZODIACANKRD34A
Ontologies - Pathways
QuickGOQ69YU3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD34A
Atlas of Cancer Signalling NetworkANKRD34A
Wikipedia pathwaysANKRD34A
Orthology - Evolution
OrthoDB284615
GeneTree (enSembl)ENSG00000272031
Phylogenetic Trees/Animal Genes : TreeFamANKRD34A
HOVERGENQ69YU3
HOGENOMQ69YU3
Homologs : HomoloGeneANKRD34A
Homology/Alignments : Family Browser (UCSC)ANKRD34A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD34A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD34A
dbVarANKRD34A
ClinVarANKRD34A
1000_GenomesANKRD34A 
Exome Variant ServerANKRD34A
ExAC (Exome Aggregation Consortium)ANKRD34A (select the gene name)
Genetic variants : HAPMAP284615
Genomic Variants (DGV)ANKRD34A [DGVbeta]
DECIPHERANKRD34A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD34A 
Mutations
ICGC Data PortalANKRD34A 
TCGA Data PortalANKRD34A 
Broad Tumor PortalANKRD34A
OASIS PortalANKRD34A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD34A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD34A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD34A
DgiDB (Drug Gene Interaction Database)ANKRD34A
DoCM (Curated mutations)ANKRD34A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD34A (select a term)
intoGenANKRD34A
Cancer3DANKRD34A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD34A
Genetic Testing Registry ANKRD34A
NextProtQ69YU3 [Medical]
TSGene284615
GENETestsANKRD34A
Huge Navigator ANKRD34A [HugePedia]
snp3D : Map Gene to Disease284615
BioCentury BCIQANKRD34A
ClinGenANKRD34A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284615
Chemical/Pharm GKB GenePA162376563
Clinical trialANKRD34A
Miscellaneous
canSAR (ICR)ANKRD34A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD34A
EVEXANKRD34A
GoPubMedANKRD34A
iHOPANKRD34A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:00:10 CEST 2017

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