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ANKRD34B (ankyrin repeat domain 34B)

Identity

Alias_symbol (synonym)DP58
Other alias
HGNC (Hugo) ANKRD34B
LocusID (NCBI) 340120
Atlas_Id 60341
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 80556755 and ends at 80570485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHORDC1 (11q14.3) / ANKRD34B (5q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD34B   33736
Cards
Entrez_Gene (NCBI)ANKRD34B  340120  ankyrin repeat domain 34B
AliasesDP58
GeneCards (Weizmann)ANKRD34B
Ensembl hg19 (Hinxton)ENSG00000189127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189127 [Gene_View]  chr5:80556755-80570485 [Contig_View]  ANKRD34B [Vega]
ICGC DataPortalENSG00000189127
TCGA cBioPortalANKRD34B
AceView (NCBI)ANKRD34B
Genatlas (Paris)ANKRD34B
WikiGenes340120
SOURCE (Princeton)ANKRD34B
Genetics Home Reference (NIH)ANKRD34B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD34B  -     chr5:80556755-80570485 -  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD34B  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD34B - 5q14.1 [CytoView hg19]  ANKRD34B - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD34B [Mapview hg19]  ANKRD34B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137441 BC137442 BC142957 BC143087 BC143088
RefSeq transcript (Entrez)NM_001004441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD34B
Cluster EST : UnigeneHs.519404 [ NCBI ]
CGAP (NCI)Hs.519404
Alternative Splicing GalleryENSG00000189127
Gene ExpressionANKRD34B [ NCBI-GEO ]   ANKRD34B [ EBI - ARRAY_EXPRESS ]   ANKRD34B [ SEEK ]   ANKRD34B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD34B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340120
GTEX Portal (Tissue expression)ANKRD34B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5PLL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5PLL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5PLL1
Splice isoforms : SwissVarA5PLL1
PhosPhoSitePlusA5PLL1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD34B
DMDM Disease mutations340120
Blocks (Seattle)ANKRD34B
SuperfamilyA5PLL1
Human Protein AtlasENSG00000189127
Peptide AtlasA5PLL1
HPRD13246
IPIIPI00464959   IPI00963817   
Protein Interaction databases
DIP (DOE-UCLA)A5PLL1
IntAct (EBI)A5PLL1
FunCoupENSG00000189127
BioGRIDANKRD34B
STRING (EMBL)ANKRD34B
ZODIACANKRD34B
Ontologies - Pathways
QuickGOA5PLL1
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkANKRD34B
Atlas of Cancer Signalling NetworkANKRD34B
Wikipedia pathwaysANKRD34B
Orthology - Evolution
OrthoDB340120
GeneTree (enSembl)ENSG00000189127
Phylogenetic Trees/Animal Genes : TreeFamANKRD34B
HOVERGENA5PLL1
HOGENOMA5PLL1
Homologs : HomoloGeneANKRD34B
Homology/Alignments : Family Browser (UCSC)ANKRD34B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD34B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD34B
dbVarANKRD34B
ClinVarANKRD34B
1000_GenomesANKRD34B 
Exome Variant ServerANKRD34B
ExAC (Exome Aggregation Consortium)ANKRD34B (select the gene name)
Genetic variants : HAPMAP340120
Genomic Variants (DGV)ANKRD34B [DGVbeta]
DECIPHERANKRD34B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD34B 
Mutations
ICGC Data PortalANKRD34B 
TCGA Data PortalANKRD34B 
Broad Tumor PortalANKRD34B
OASIS PortalANKRD34B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD34B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD34B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD34B
DgiDB (Drug Gene Interaction Database)ANKRD34B
DoCM (Curated mutations)ANKRD34B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD34B (select a term)
intoGenANKRD34B
Cancer3DANKRD34B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD34B
Genetic Testing Registry ANKRD34B
NextProtA5PLL1 [Medical]
TSGene340120
GENETestsANKRD34B
Target ValidationANKRD34B
Huge Navigator ANKRD34B [HugePedia]
snp3D : Map Gene to Disease340120
BioCentury BCIQANKRD34B
ClinGenANKRD34B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340120
Chemical/Pharm GKB GenePA162376576
Clinical trialANKRD34B
Miscellaneous
canSAR (ICR)ANKRD34B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD34B
EVEXANKRD34B
GoPubMedANKRD34B
iHOPANKRD34B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:23 CEST 2017

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