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ANKRD34C (ankyrin repeat domain 34C)

Identity

Other alias-
HGNC (Hugo) ANKRD34C
LocusID (NCBI) 390616
Atlas_Id 60342
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79282804 and ends at 79298239 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF2AK4 (15q15.1) / ANKRD34C (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD34C   33888
Cards
Entrez_Gene (NCBI)ANKRD34C  390616  ankyrin repeat domain 34C
Aliases
GeneCards (Weizmann)ANKRD34C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:79282804-79298239 [Contig_View]  ANKRD34C [Vega]
TCGA cBioPortalANKRD34C
AceView (NCBI)ANKRD34C
Genatlas (Paris)ANKRD34C
WikiGenes390616
SOURCE (Princeton)ANKRD34C
Genetics Home Reference (NIH)ANKRD34C
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD34C  -     chr15:79282804-79298239 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD34C  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD34C - 15q25.1 [CytoView hg19]  ANKRD34C - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD34C [Mapview hg19]  ANKRD34C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090665 AK127037 AL109678
RefSeq transcript (Entrez)NM_001146341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD34C
Cluster EST : UnigeneHs.531231 [ NCBI ]
CGAP (NCI)Hs.531231
Gene ExpressionANKRD34C [ NCBI-GEO ]   ANKRD34C [ EBI - ARRAY_EXPRESS ]   ANKRD34C [ SEEK ]   ANKRD34C [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD34C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390616
GTEX Portal (Tissue expression)ANKRD34C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C6C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C6C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C6C1
Splice isoforms : SwissVarP0C6C1
PhosPhoSitePlusP0C6C1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD34C
DMDM Disease mutations390616
Blocks (Seattle)ANKRD34C
SuperfamilyP0C6C1
Peptide AtlasP0C6C1
IPIIPI00741635   
Protein Interaction databases
DIP (DOE-UCLA)P0C6C1
IntAct (EBI)P0C6C1
BioGRIDANKRD34C
STRING (EMBL)ANKRD34C
ZODIACANKRD34C
Ontologies - Pathways
QuickGOP0C6C1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD34C
Atlas of Cancer Signalling NetworkANKRD34C
Wikipedia pathwaysANKRD34C
Orthology - Evolution
OrthoDB390616
Phylogenetic Trees/Animal Genes : TreeFamANKRD34C
HOVERGENP0C6C1
HOGENOMP0C6C1
Homologs : HomoloGeneANKRD34C
Homology/Alignments : Family Browser (UCSC)ANKRD34C
Gene fusions - Rearrangements
Fusion: Tumor Portal ANKRD34C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD34C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD34C
dbVarANKRD34C
ClinVarANKRD34C
1000_GenomesANKRD34C 
Exome Variant ServerANKRD34C
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP390616
Genomic Variants (DGV)ANKRD34C [DGVbeta]
DECIPHERANKRD34C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD34C 
Mutations
ICGC Data PortalANKRD34C 
TCGA Data PortalANKRD34C 
Broad Tumor PortalANKRD34C
OASIS PortalANKRD34C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD34C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD34C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD34C
DgiDB (Drug Gene Interaction Database)ANKRD34C
DoCM (Curated mutations)ANKRD34C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD34C (select a term)
intoGenANKRD34C
Cancer3DANKRD34C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD34C
Genetic Testing Registry ANKRD34C
NextProtP0C6C1 [Medical]
TSGene390616
GENETestsANKRD34C
Target ValidationANKRD34C
Huge Navigator ANKRD34C [HugePedia]
snp3D : Map Gene to Disease390616
BioCentury BCIQANKRD34C
ClinGenANKRD34C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390616
Chemical/Pharm GKB GenePA162376577
Clinical trialANKRD34C
Miscellaneous
canSAR (ICR)ANKRD34C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD34C
EVEXANKRD34C
GoPubMedANKRD34C
iHOPANKRD34C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:46 CET 2017

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