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ANKRD34C (ankyrin repeat domain 34C)

Identity

Alias (NCBI)-
HGNC (Hugo) ANKRD34C
LocusID (NCBI) 390616
Atlas_Id 60342
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79282722 and ends at 79298239 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF2AK4 (15q15.1) / ANKRD34C (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ANKRD34C   33888
Cards
Entrez_Gene (NCBI)ANKRD34C    ankyrin repeat domain 34C
Aliases
GeneCards (Weizmann)ANKRD34C
Ensembl hg19 (Hinxton)ENSG00000235711 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235711 [Gene_View]  ENSG00000235711 [Sequence]  chr15:79282722-79298239 [Contig_View]  ANKRD34C [Vega]
ICGC DataPortalENSG00000235711
TCGA cBioPortalANKRD34C
AceView (NCBI)ANKRD34C
Genatlas (Paris)ANKRD34C
SOURCE (Princeton)ANKRD34C
Genetics Home Reference (NIH)ANKRD34C
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD34C  -     chr15:79282722-79298239 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD34C  -     15q25.1   [Description]    (hg19-Feb_2009)
GoldenPathANKRD34C - 15q25.1 [CytoView hg19]  ANKRD34C - 15q25.1 [CytoView hg38]
ImmunoBaseENSG00000235711
Genome Data Viewer NCBIANKRD34C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK090665 AK127037 AL109678
RefSeq transcript (Entrez)NM_001146341
Consensus coding sequences : CCDS (NCBI)ANKRD34C
Gene ExpressionANKRD34C [ NCBI-GEO ]   ANKRD34C [ EBI - ARRAY_EXPRESS ]   ANKRD34C [ SEEK ]   ANKRD34C [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD34C [ Firebrowse - Broad ]
GenevisibleExpression of ANKRD34C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390616
GTEX Portal (Tissue expression)ANKRD34C
Human Protein AtlasENSG00000235711-ANKRD34C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C6C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C6C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C6C1
PhosPhoSitePlusP0C6C1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)AN34A/B/C    Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD34C
SuperfamilyP0C6C1
AlphaFold pdb e-kbP0C6C1   
Human Protein Atlas [tissue]ENSG00000235711-ANKRD34C [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0C6C1
IntAct (EBI)P0C6C1
BioGRIDANKRD34C
STRING (EMBL)ANKRD34C
ZODIACANKRD34C
Ontologies - Pathways
QuickGOP0C6C1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD34C
Atlas of Cancer Signalling NetworkANKRD34C
Wikipedia pathwaysANKRD34C
Orthology - Evolution
OrthoDB390616
GeneTree (enSembl)ENSG00000235711
Phylogenetic Trees/Animal Genes : TreeFamANKRD34C
Homologs : HomoloGeneANKRD34C
Homology/Alignments : Family Browser (UCSC)ANKRD34C
Gene fusions - Rearrangements
Fusion : QuiverANKRD34C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD34C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD34C
dbVarANKRD34C
ClinVarANKRD34C
MonarchANKRD34C
1000_GenomesANKRD34C 
Exome Variant ServerANKRD34C
GNOMAD BrowserENSG00000235711
Varsome BrowserANKRD34C
ACMGANKRD34C variants
VarityP0C6C1
Genomic Variants (DGV)ANKRD34C [DGVbeta]
DECIPHERANKRD34C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD34C 
Mutations
ICGC Data PortalANKRD34C 
TCGA Data PortalANKRD34C 
Broad Tumor PortalANKRD34C
OASIS PortalANKRD34C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD34C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DANKRD34C
Mutations and Diseases : HGMDANKRD34C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaANKRD34C
DgiDB (Drug Gene Interaction Database)ANKRD34C
DoCM (Curated mutations)ANKRD34C
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD34C
Cancer3DANKRD34C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD34C
MedgenANKRD34C
Genetic Testing Registry ANKRD34C
NextProtP0C6C1 [Medical]
GENETestsANKRD34C
Target ValidationANKRD34C
Huge Navigator ANKRD34C [HugePedia]
ClinGenANKRD34C
Clinical trials, drugs, therapy
MyCancerGenomeANKRD34C
Protein Interactions : CTDANKRD34C
Pharm GKB GenePA162376577
PharosP0C6C1
Clinical trialANKRD34C
Miscellaneous
canSAR (ICR)ANKRD34C
HarmonizomeANKRD34C
DataMed IndexANKRD34C
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXANKRD34C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:42:07 CEST 2021

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