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ANKRD36B (ankyrin repeat domain 36B)

Identity

Alias_namesKIAA1641
KIAA1641
Alias_symbol (synonym)FLJ21281
Other alias
HGNC (Hugo) ANKRD36B
LocusID (NCBI) 57730
Atlas_Id 41067
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97504798 and ends at 97589965 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD36B (2q11.2) / PTPRK (6q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD36B   29333
Cards
Entrez_Gene (NCBI)ANKRD36B  57730  ankyrin repeat domain 36B
AliasesKIAA1641
GeneCards (Weizmann)ANKRD36B
Ensembl hg19 (Hinxton)ENSG00000196912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196912 [Gene_View]  chr2:97504798-97589965 [Contig_View]  ANKRD36B [Vega]
ICGC DataPortalENSG00000196912
TCGA cBioPortalANKRD36B
AceView (NCBI)ANKRD36B
Genatlas (Paris)ANKRD36B
WikiGenes57730
SOURCE (Princeton)ANKRD36B
Genetics Home Reference (NIH)ANKRD36B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD36B  -     chr2:97504798-97589965 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD36B  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD36B - 2q11.2 [CytoView hg19]  ANKRD36B - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD36B [Mapview hg19]  ANKRD36B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF432208 AF432209 AK024934 AK056042 AK074570
RefSeq transcript (Entrez)NM_020970 NM_025190
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD36B
Cluster EST : UnigeneHs.532921 [ NCBI ]
CGAP (NCI)Hs.532921
Alternative Splicing GalleryENSG00000196912
Gene ExpressionANKRD36B [ NCBI-GEO ]   ANKRD36B [ EBI - ARRAY_EXPRESS ]   ANKRD36B [ SEEK ]   ANKRD36B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD36B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57730
GTEX Portal (Tissue expression)ANKRD36B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2N9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2N9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2N9
Splice isoforms : SwissVarQ8N2N9
PhosPhoSitePlusQ8N2N9
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD36B
DMDM Disease mutations57730
Blocks (Seattle)ANKRD36B
SuperfamilyQ8N2N9
Human Protein AtlasENSG00000196912
Peptide AtlasQ8N2N9
HPRD10027
IPIIPI00953306   IPI00893166   IPI00186004   IPI00478632   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2N9
IntAct (EBI)Q8N2N9
FunCoupENSG00000196912
BioGRIDANKRD36B
STRING (EMBL)ANKRD36B
ZODIACANKRD36B
Ontologies - Pathways
QuickGOQ8N2N9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkANKRD36B
Atlas of Cancer Signalling NetworkANKRD36B
Wikipedia pathwaysANKRD36B
Orthology - Evolution
OrthoDB57730
GeneTree (enSembl)ENSG00000196912
Phylogenetic Trees/Animal Genes : TreeFamANKRD36B
HOVERGENQ8N2N9
HOGENOMQ8N2N9
Homologs : HomoloGeneANKRD36B
Homology/Alignments : Family Browser (UCSC)ANKRD36B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD36B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD36B
dbVarANKRD36B
ClinVarANKRD36B
1000_GenomesANKRD36B 
Exome Variant ServerANKRD36B
ExAC (Exome Aggregation Consortium)ANKRD36B (select the gene name)
Genetic variants : HAPMAP57730
Genomic Variants (DGV)ANKRD36B [DGVbeta]
DECIPHERANKRD36B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD36B 
Mutations
ICGC Data PortalANKRD36B 
TCGA Data PortalANKRD36B 
Broad Tumor PortalANKRD36B
OASIS PortalANKRD36B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD36B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD36B
DgiDB (Drug Gene Interaction Database)ANKRD36B
DoCM (Curated mutations)ANKRD36B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD36B (select a term)
intoGenANKRD36B
Cancer3DANKRD36B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD36B
Genetic Testing Registry ANKRD36B
NextProtQ8N2N9 [Medical]
TSGene57730
GENETestsANKRD36B
Target ValidationANKRD36B
Huge Navigator ANKRD36B [HugePedia]
snp3D : Map Gene to Disease57730
BioCentury BCIQANKRD36B
ClinGenANKRD36B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57730
Chemical/Pharm GKB GenePA162376583
Clinical trialANKRD36B
Miscellaneous
canSAR (ICR)ANKRD36B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD36B
EVEXANKRD36B
GoPubMedANKRD36B
iHOPANKRD36B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:46:49 CEST 2017

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