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ANKRD39 (ankyrin repeat domain 39)

Identity

Alias_symbol (synonym)MGC41816
Other alias-
HGNC (Hugo) ANKRD39
LocusID (NCBI) 51239
Atlas_Id 60349
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96847987 and ends at 96858019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD39 (2q11.2) / ANKRD23 (2q11.2)ANKRD39 (2q11.2) / FAM178B (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD39   28640
Cards
Entrez_Gene (NCBI)ANKRD39  51239  ankyrin repeat domain 39
Aliases
GeneCards (Weizmann)ANKRD39
Ensembl hg19 (Hinxton)ENSG00000213337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213337 [Gene_View]  chr2:96847987-96858019 [Contig_View]  ANKRD39 [Vega]
ICGC DataPortalENSG00000213337
TCGA cBioPortalANKRD39
AceView (NCBI)ANKRD39
Genatlas (Paris)ANKRD39
WikiGenes51239
SOURCE (Princeton)ANKRD39
Genetics Home Reference (NIH)ANKRD39
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD39  -     chr2:96847987-96858019 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD39  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD39 - 2q11.2 [CytoView hg19]  ANKRD39 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD39 [Mapview hg19]  ANKRD39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151034 AK312193 BC031303 BU626151 BX091421
RefSeq transcript (Entrez)NM_016466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD39
Cluster EST : UnigeneHs.709507 [ NCBI ]
CGAP (NCI)Hs.709507
Alternative Splicing GalleryENSG00000213337
Gene ExpressionANKRD39 [ NCBI-GEO ]   ANKRD39 [ EBI - ARRAY_EXPRESS ]   ANKRD39 [ SEEK ]   ANKRD39 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51239
GTEX Portal (Tissue expression)ANKRD39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53RE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53RE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53RE8
Splice isoforms : SwissVarQ53RE8
PhosPhoSitePlusQ53RE8
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD39
DMDM Disease mutations51239
Blocks (Seattle)ANKRD39
SuperfamilyQ53RE8
Human Protein AtlasENSG00000213337
Peptide AtlasQ53RE8
HPRD14614
IPIIPI00337574   IPI00884424   
Protein Interaction databases
DIP (DOE-UCLA)Q53RE8
IntAct (EBI)Q53RE8
FunCoupENSG00000213337
BioGRIDANKRD39
STRING (EMBL)ANKRD39
ZODIACANKRD39
Ontologies - Pathways
QuickGOQ53RE8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkANKRD39
Atlas of Cancer Signalling NetworkANKRD39
Wikipedia pathwaysANKRD39
Orthology - Evolution
OrthoDB51239
GeneTree (enSembl)ENSG00000213337
Phylogenetic Trees/Animal Genes : TreeFamANKRD39
HOVERGENQ53RE8
HOGENOMQ53RE8
Homologs : HomoloGeneANKRD39
Homology/Alignments : Family Browser (UCSC)ANKRD39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD39
dbVarANKRD39
ClinVarANKRD39
1000_GenomesANKRD39 
Exome Variant ServerANKRD39
ExAC (Exome Aggregation Consortium)ANKRD39 (select the gene name)
Genetic variants : HAPMAP51239
Genomic Variants (DGV)ANKRD39 [DGVbeta]
DECIPHERANKRD39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD39 
Mutations
ICGC Data PortalANKRD39 
TCGA Data PortalANKRD39 
Broad Tumor PortalANKRD39
OASIS PortalANKRD39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD39
DgiDB (Drug Gene Interaction Database)ANKRD39
DoCM (Curated mutations)ANKRD39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD39 (select a term)
intoGenANKRD39
Cancer3DANKRD39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD39
Genetic Testing Registry ANKRD39
NextProtQ53RE8 [Medical]
TSGene51239
GENETestsANKRD39
Target ValidationANKRD39
Huge Navigator ANKRD39 [HugePedia]
snp3D : Map Gene to Disease51239
BioCentury BCIQANKRD39
ClinGenANKRD39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51239
Chemical/Pharm GKB GenePA142672606
Clinical trialANKRD39
Miscellaneous
canSAR (ICR)ANKRD39 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD39
EVEXANKRD39
GoPubMedANKRD39
iHOPANKRD39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:24 CEST 2017

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