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ANKRD42 (ankyrin repeat domain 42)

Identity

Alias_symbol (synonym)FLJ37874
SARP
PPP1R79
Other alias
HGNC (Hugo) ANKRD42
LocusID (NCBI) 338699
Atlas_Id 60351
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 83193739 and ends at 83256099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADIPOR2 (12p13.33) / ANKRD42 (11q14.1)ANKRD42 (11q14.1) / RHOD (11q13.2)SRPK1 (6p21.31) / ANKRD42 (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;11)(p21;q14) SRPK1/ANKRD42
t(11;11)(q13;q14) ANKRD42/RHOD

External links

Nomenclature
HGNC (Hugo)ANKRD42   26752
Cards
Entrez_Gene (NCBI)ANKRD42  338699  ankyrin repeat domain 42
AliasesPPP1R79; SARP
GeneCards (Weizmann)ANKRD42
Ensembl hg19 (Hinxton)ENSG00000137494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137494 [Gene_View]  ENSG00000137494 [Sequence]  chr11:83193739-83256099 [Contig_View]  ANKRD42 [Vega]
ICGC DataPortalENSG00000137494
TCGA cBioPortalANKRD42
AceView (NCBI)ANKRD42
Genatlas (Paris)ANKRD42
WikiGenes338699
SOURCE (Princeton)ANKRD42
Genetics Home Reference (NIH)ANKRD42
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD42  -     chr11:83193739-83256099 +  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD42  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD42 - 11q14.1 [CytoView hg19]  ANKRD42 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD42 [Mapview hg19]  ANKRD42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095193 AK310765 BC045621 BC062729 BC171752
RefSeq transcript (Entrez)NM_001300972 NM_001300973 NM_001300975 NM_001300976 NM_001300977 NM_182603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD42
Cluster EST : UnigeneHs.657164 [ NCBI ]
CGAP (NCI)Hs.657164
Alternative Splicing GalleryENSG00000137494
Gene ExpressionANKRD42 [ NCBI-GEO ]   ANKRD42 [ EBI - ARRAY_EXPRESS ]   ANKRD42 [ SEEK ]   ANKRD42 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338699
GTEX Portal (Tissue expression)ANKRD42
Human Protein AtlasENSG00000137494-ANKRD42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9B4
Splice isoforms : SwissVarQ8N9B4
PhosPhoSitePlusQ8N9B4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    EF_Hand_1_Ca_BS   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD42
DMDM Disease mutations338699
Blocks (Seattle)ANKRD42
SuperfamilyQ8N9B4
Human Protein Atlas [tissue]ENSG00000137494-ANKRD42 [tissue]
Peptide AtlasQ8N9B4
HPRD08230
IPIIPI00298502   IPI00760686   IPI00984556   IPI00872928   IPI00977606   IPI00983224   IPI00976948   IPI00976443   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9B4
IntAct (EBI)Q8N9B4
FunCoupENSG00000137494
BioGRIDANKRD42
STRING (EMBL)ANKRD42
ZODIACANKRD42
Ontologies - Pathways
QuickGOQ8N9B4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD42
Atlas of Cancer Signalling NetworkANKRD42
Wikipedia pathwaysANKRD42
Orthology - Evolution
OrthoDB338699
GeneTree (enSembl)ENSG00000137494
Phylogenetic Trees/Animal Genes : TreeFamANKRD42
HOVERGENQ8N9B4
HOGENOMQ8N9B4
Homologs : HomoloGeneANKRD42
Homology/Alignments : Family Browser (UCSC)ANKRD42
Gene fusions - Rearrangements
Fusion : QuiverANKRD42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD42
dbVarANKRD42
ClinVarANKRD42
1000_GenomesANKRD42 
Exome Variant ServerANKRD42
ExAC (Exome Aggregation Consortium)ENSG00000137494
GNOMAD BrowserENSG00000137494
Varsome BrowserANKRD42
Genetic variants : HAPMAP338699
Genomic Variants (DGV)ANKRD42 [DGVbeta]
DECIPHERANKRD42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD42 
Mutations
ICGC Data PortalANKRD42 
TCGA Data PortalANKRD42 
Broad Tumor PortalANKRD42
OASIS PortalANKRD42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD42
DgiDB (Drug Gene Interaction Database)ANKRD42
DoCM (Curated mutations)ANKRD42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD42 (select a term)
intoGenANKRD42
Cancer3DANKRD42(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD42
MedgenANKRD42
Genetic Testing Registry ANKRD42
NextProtQ8N9B4 [Medical]
TSGene338699
GENETestsANKRD42
Target ValidationANKRD42
Huge Navigator ANKRD42 [HugePedia]
snp3D : Map Gene to Disease338699
BioCentury BCIQANKRD42
ClinGenANKRD42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338699
Chemical/Pharm GKB GenePA142672609
Clinical trialANKRD42
Miscellaneous
canSAR (ICR)ANKRD42 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD42
EVEXANKRD42
GoPubMedANKRD42
iHOPANKRD42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:35:28 CEST 2018
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