Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANKRD44 (ankyrin repeat domain 44)

Identity

Alias_symbol (synonym)PP6-ARS-B
Other alias
HGNC (Hugo) ANKRD44
LocusID (NCBI) 91526
Atlas_Id 47029
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 197099471 and ends at 197310797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD44 (2q33.1) / TMEM131 (2q11.2)FBXW4 (10q24.32) / ANKRD44 (2q33.1)MALAT1 (11q13.1) / ANKRD44 (2q33.1)
PTPN14 (1q41) / ANKRD44 (2q33.1)PTPN14 1q41 / ANKRD44 2q33.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;2)(q41;q33) PTPN14/ANKRD44


External links

Nomenclature
HGNC (Hugo)ANKRD44   25259
Cards
Entrez_Gene (NCBI)ANKRD44  91526  ankyrin repeat domain 44
AliasesPP6-ARS-B
GeneCards (Weizmann)ANKRD44
Ensembl hg19 (Hinxton)ENSG00000065413 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065413 [Gene_View]  ENSG00000065413 [Sequence]  chr2:197099471-197310797 [Contig_View]  ANKRD44 [Vega]
ICGC DataPortalENSG00000065413
TCGA cBioPortalANKRD44
AceView (NCBI)ANKRD44
Genatlas (Paris)ANKRD44
WikiGenes91526
SOURCE (Princeton)ANKRD44
Genetics Home Reference (NIH)ANKRD44
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD44  -     chr2:197099471-197310797 -  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD44  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD44 - 2q33.1 [CytoView hg19]  ANKRD44 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD44 [Mapview hg19]  ANKRD44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI439698 AK021632 AK097086 AK124039 AK301209
RefSeq transcript (Entrez)NM_001195144 NM_153697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD44
Cluster EST : UnigeneHs.432706 [ NCBI ]
CGAP (NCI)Hs.432706
Alternative Splicing GalleryENSG00000065413
Gene ExpressionANKRD44 [ NCBI-GEO ]   ANKRD44 [ EBI - ARRAY_EXPRESS ]   ANKRD44 [ SEEK ]   ANKRD44 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91526
GTEX Portal (Tissue expression)ANKRD44
Human Protein AtlasENSG00000065413-ANKRD44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8A2
Splice isoforms : SwissVarQ8N8A2
PhosPhoSitePlusQ8N8A2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD44
DMDM Disease mutations91526
Blocks (Seattle)ANKRD44
SuperfamilyQ8N8A2
Human Protein Atlas [tissue]ENSG00000065413-ANKRD44 [tissue]
Peptide AtlasQ8N8A2
HPRD14284
IPIIPI00761054   IPI00167419   IPI00477624   IPI00395999   IPI00915264   IPI00942283   IPI00916720   IPI00916138   IPI00916457   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8A2
IntAct (EBI)Q8N8A2
FunCoupENSG00000065413
BioGRIDANKRD44
STRING (EMBL)ANKRD44
ZODIACANKRD44
Ontologies - Pathways
QuickGOQ8N8A2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkANKRD44
Atlas of Cancer Signalling NetworkANKRD44
Wikipedia pathwaysANKRD44
Orthology - Evolution
OrthoDB91526
GeneTree (enSembl)ENSG00000065413
Phylogenetic Trees/Animal Genes : TreeFamANKRD44
HOVERGENQ8N8A2
HOGENOMQ8N8A2
Homologs : HomoloGeneANKRD44
Homology/Alignments : Family Browser (UCSC)ANKRD44
Gene fusions - Rearrangements
Fusion : MitelmanPTPN14/ANKRD44 [1q41/2q33.1]  [t(1;2)(q41;q33)]  
Fusion PortalPTPN14 1q41 ANKRD44 2q33.1 OV
Fusion : QuiverANKRD44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD44
dbVarANKRD44
ClinVarANKRD44
1000_GenomesANKRD44 
Exome Variant ServerANKRD44
ExAC (Exome Aggregation Consortium)ENSG00000065413
GNOMAD BrowserENSG00000065413
Varsome BrowserANKRD44
Genetic variants : HAPMAP91526
Genomic Variants (DGV)ANKRD44 [DGVbeta]
DECIPHERANKRD44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD44 
Mutations
ICGC Data PortalANKRD44 
TCGA Data PortalANKRD44 
Broad Tumor PortalANKRD44
OASIS PortalANKRD44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD44
DgiDB (Drug Gene Interaction Database)ANKRD44
DoCM (Curated mutations)ANKRD44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD44 (select a term)
intoGenANKRD44
Cancer3DANKRD44(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD44
MedgenANKRD44
Genetic Testing Registry ANKRD44
NextProtQ8N8A2 [Medical]
TSGene91526
GENETestsANKRD44
Target ValidationANKRD44
Huge Navigator ANKRD44 [HugePedia]
snp3D : Map Gene to Disease91526
BioCentury BCIQANKRD44
ClinGenANKRD44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91526
Chemical/Pharm GKB GenePA142672611
Clinical trialANKRD44
Miscellaneous
canSAR (ICR)ANKRD44 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD44
EVEXANKRD44
GoPubMedANKRD44
iHOPANKRD44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:51:15 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.