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ANKRD45 (ankyrin repeat domain 45)

Identity

Alias_symbol (synonym)FLJ45235
CT117
Other alias
HGNC (Hugo) ANKRD45
LocusID (NCBI) 339416
Atlas_Id 60353
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 173608336 and ends at 173669862 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD45   24786
Cards
Entrez_Gene (NCBI)ANKRD45  339416  ankyrin repeat domain 45
AliasesCT117
GeneCards (Weizmann)ANKRD45
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:173608336-173669862 [Contig_View]  ANKRD45 [Vega]
TCGA cBioPortalANKRD45
AceView (NCBI)ANKRD45
Genatlas (Paris)ANKRD45
WikiGenes339416
SOURCE (Princeton)ANKRD45
Genetics Home Reference (NIH)ANKRD45
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD45  -     chr1:173608336-173669862 -  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD45  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblANKRD45 - 1q25.1 [CytoView hg19]  ANKRD45 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBIANKRD45 [Mapview hg19]  ANKRD45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127170 BC029866 BC094694 BC126353 BC126355
RefSeq transcript (Entrez)NM_198493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD45
Cluster EST : UnigeneHs.130054 [ NCBI ]
CGAP (NCI)Hs.130054
Gene ExpressionANKRD45 [ NCBI-GEO ]   ANKRD45 [ EBI - ARRAY_EXPRESS ]   ANKRD45 [ SEEK ]   ANKRD45 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339416
GTEX Portal (Tissue expression)ANKRD45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TZF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TZF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TZF3
Splice isoforms : SwissVarQ5TZF3
PhosPhoSitePlusQ5TZF3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    HSP70_C   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD45
DMDM Disease mutations339416
Blocks (Seattle)ANKRD45
SuperfamilyQ5TZF3
Peptide AtlasQ5TZF3
HPRD13501
IPIIPI00747060   IPI00243626   
Protein Interaction databases
DIP (DOE-UCLA)Q5TZF3
IntAct (EBI)Q5TZF3
BioGRIDANKRD45
STRING (EMBL)ANKRD45
ZODIACANKRD45
Ontologies - Pathways
QuickGOQ5TZF3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkANKRD45
Atlas of Cancer Signalling NetworkANKRD45
Wikipedia pathwaysANKRD45
Orthology - Evolution
OrthoDB339416
Phylogenetic Trees/Animal Genes : TreeFamANKRD45
HOVERGENQ5TZF3
HOGENOMQ5TZF3
Homologs : HomoloGeneANKRD45
Homology/Alignments : Family Browser (UCSC)ANKRD45
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD45
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD45
dbVarANKRD45
ClinVarANKRD45
1000_GenomesANKRD45 
Exome Variant ServerANKRD45
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP339416
Genomic Variants (DGV)ANKRD45 [DGVbeta]
DECIPHERANKRD45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD45 
Mutations
ICGC Data PortalANKRD45 
TCGA Data PortalANKRD45 
Broad Tumor PortalANKRD45
OASIS PortalANKRD45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD45
DgiDB (Drug Gene Interaction Database)ANKRD45
DoCM (Curated mutations)ANKRD45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD45 (select a term)
intoGenANKRD45
Cancer3DANKRD45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD45
MedgenANKRD45
Genetic Testing Registry ANKRD45
NextProtQ5TZF3 [Medical]
TSGene339416
GENETestsANKRD45
Target ValidationANKRD45
Huge Navigator ANKRD45 [HugePedia]
snp3D : Map Gene to Disease339416
BioCentury BCIQANKRD45
ClinGenANKRD45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339416
Chemical/Pharm GKB GenePA142672612
Clinical trialANKRD45
Miscellaneous
canSAR (ICR)ANKRD45 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD45
EVEXANKRD45
GoPubMedANKRD45
iHOPANKRD45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:14 CET 2017

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